Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00042 ATGTTGTTTGATGAATCAAAATTCATAGGTTGGTTGATAGCTACGATGACTTCTCTAACTTTTCCTTTTCCTTATTCGTACGTTGTTCTGCTGATTGTTCTCCTCTTTCTCTCGTCTTTGTTCACTGCTACTTCTTCAAACTGTGGTGGTTCTAGTGTGAACTTAACCTCCTCTTTAAACAGCAAAGATTCAACGACAGCATGGAATTCACCTTCTGGCCACTTTGCCTTTGGTTTCCAATCAGTTCTATACGAGAACAAGGAGTTCATGTCCGTGCTTGCAGTTTGGTTTGCCAAAGACCCCAACAAAACCATGGTTTGGTATGCAAAGCCAGGAAAAGAAAAAACTCATCTTTTTCCGTTAGGATCAACAGTGAATCTCACAAGCAAAGGAATTGTCGTGTATGATCCAAAGGGTCATGACATGTTGTGGCAACGTCCAGAAAACAACACTGATTCTTTAGTATCATGTGCTTTTGTGCTAGACAATGGAAGTTTTGAGCTTGTGGATGATGATGGGAAGAAGGTTTGGGAGAGCTTTGAGGAACCCACAGATACTATTTTGCCTGGTCAGAATCTGTCTAGGCCTCGAAGCTTCAGAGCACGCCAATCTGACACGAGTTTTGATGATGGGAATTTTGAACTCAGTTGGCAGGGTGATAGCAATTTGGTTCTTTACCATTCTCCAAAATCAAGCAACGATGATGCTGAAAGCTCTCAGTCTCCAACACACGACGCTTACTGGGCCACTGGAACTGTCGGAACTGAATCACAGCTTTTCTTTGATGAGTCTGGACACATGTACATAAAAAATGGCACGGGCACAGTGATCAGTGATATCACAAATGGTGGATCTGATGAGTTCTTTTACATGGCTAGAATTGACCCTGATGGGGTTTTCAGACTATATCGGCACCCAAAAGATGAGAACAAAGCTGTGGCTAATAGTTGCAGTTCAACGTGGTGGAGTGTGGAGCAAAAGCATCCAGATGATATTTGCCTTTCCTTCACGAAGCAAACTGGGAATGTTATCTGTGGTTTTAACAGCTACTGTGTTAGCAGCGGTGAGAGGACTAATTGTGAGTGCCCGGAGCATTATTCTCCTTTCGAACATGACAATCTCATAGGTTGTAGACCAGATTTTCCACTGCCCAGTTGCAACAGAGACGGGTGGGAGCAGAATAAGGATCTTGTAGATTTCAACGAGTATCCCAATTTGGACTGGCCTCTCTCAGATTATGATAAGTTTGAAACTGGAATGGACAAGGATTTGTGCAGACAAAGGTGCCTTGAAGATTGCTTTTGTGCTGTGGCCATATATGGTGATGGAAGCTGTTGGAAGAAGAAGTATCCAATGAGCAATGGAAGGAAGCACGCGAATGTGACTAAAATAGCTTTTGTCAAGGTGCCCAAAACAGATTTAAACAATGATGAAAAAGAACAGACTACACTTGTGATTGTCATATCAATACTCCTTGGAAGCTCAGTGTTCATCAATGTCCTTCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAGGCTTTTGAACAGTCAGAACCTGTCAGTTGGTACAGTCAGTCACTTTACCTACAAGGAGCTTGAAGAAGCAACCACAGGGTTCAAACAAATGTTGGGTCGAGGTGCTTTTGGAAAAGTTTATAAAGGGGTGTTGAGATCAAACGCAAGCAGGTATGTTGCTGTGAAGAGGCTAGACAAGGTTGTGCAAGAAGGTGAGAAGGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGAAACTTGGTTCGTCTGTTTGGTTTTTGTGATGAAGGGGAGCATCGTCTTTTGGTGTATGAGTACATGAGCAATGGTTCATTGGCTGGTTTTCTCTTTGGGATCTCAAGGCCTCATTGGAACCAAAGAGTGCAAATTGCTTTGGGGATTGCAAGGGGGCTCACGTATTTGCATGAAGAGTGCAGCACTCAGATAATTCACTGTGACATAAAGCCTCAGAATATACTCCTGGATGAGTTTTTCACTCCAAGGATTTCTGATTTTGGCTTGGCAAAGTTGTTGCTGGCTGAGCAAACTAAAGCTGCTAGAACTGGTTTGAGAGGGACAATTGGTTACTTTGCACCAGAATGGTTTAGGAAAGCTACAATCACAACCAAAGTAGATGTTTACAGTTTTGGAGTGGTGCTGTTAGAGATCGTATGTTGCAAGTCAAGTGTTGCATTTGCGTTGGAAAGTGAAGAAGAGGCACTCATAGATTGGGCTTATCGATGTTATAGCCAAGGGAATGTAGCTAAATTGGTGGAAAATGATGAGGAGGCAAAGGATGATATGAAGAGGCTGGAGAAGCATGTCATGGTTGCAATTTGGTGCATTCAAGAGGATCCTTCACTCAGACCTTCCATGAAAAAGGTTACACAGATGCTTGAGGGTGTTACAACAGTTTCTGTGCCACCTTGCCCTTCTATATTCACTTCATCTTCTTTTTAA 2499 0.4262 MLFDESKFIGWLIATMTSLTFPFPYSYVVLLIVLLFLSSLFTATSSNCGGSSVNLTSSLNSKDSTTAWNSPSGHFAFGFQSVLYENKEFMSVLAVWFAKDPNKTMVWYAKPGKEKTHLFPLGSTVNLTSKGIVVYDPKGHDMLWQRPENNTDSLVSCAFVLDNGSFELVDDDGKKVWESFEEPTDTILPGQNLSRPRSFRARQSDTSFDDGNFELSWQGDSNLVLYHSPKSSNDDAESSQSPTHDAYWATGTVGTESQLFFDESGHMYIKNGTGTVISDITNGGSDEFFYMARIDPDGVFRLYRHPKDENKAVANSCSSTWWSVEQKHPDDICLSFTKQTGNVICGFNSYCVSSGERTNCECPEHYSPFEHDNLIGCRPDFPLPSCNRDGWEQNKDLVDFNEYPNLDWPLSDYDKFETGMDKDLCRQRCLEDCFCAVAIYGDGSCWKKKYPMSNGRKHANVTKIAFVKVPKTDLNNDEKEQTTLVIVISILLGSSVFINVLLLVALFAAFFIFYHKRLLNSQNLSVGTVSHFTYKELEEATTGFKQMLGRGAFGKVYKGVLRSNASRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLFGFCDEGEHRLLVYEYMSNGSLAGFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDEFFTPRISDFGLAKLLLAEQTKAARTGLRGTIGYFAPEWFRKATITTKVDVYSFGVVLLEIVCCKSSVAFALESEEEALIDWAYRCYSQGNVAKLVENDEEAKDDMKRLEKHVMVAIWCIQEDPSLRPSMKKVTQMLEGVTTVSVPPCPSIFTSSSF 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00042 832 ProSitePatterns Protein kinases ATP-binding region signature. 548 572 IPR017441 GO:0005524
Vian5g00042 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 620 820 - -
Vian5g00042 832 Gene3D - 183 315 IPR036426 -
Vian5g00042 832 Gene3D - 50 181 IPR036426 -
Vian5g00042 832 SMART blect_4 50 183 IPR001480 -
Vian5g00042 832 CDD PAN_AP_plant 392 470 - -
Vian5g00042 832 Pfam Protein tyrosine and serine/threonine kinase 544 812 IPR001245 GO:0004672|GO:0006468
Vian5g00042 832 Coils Coil 767 787 - -
Vian5g00042 832 Gene3D Phosphorylase Kinase; domain 1 514 619 - -
Vian5g00042 832 ProSiteProfiles Protein kinase domain profile. 542 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00042 832 FunFam S-receptor-like serine/threonine-protein kinase 515 619 - -
Vian5g00042 832 PIRSF SRK 22 831 IPR024171 GO:0004674
Vian5g00042 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 204 306 IPR036426 -
Vian5g00042 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 252 IPR036426 -
Vian5g00042 832 CDD STKc_IRAK 548 814 - -
Vian5g00042 832 SMART serkin_6 542 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00042 832 SUPERFAMILY Protein kinase-like (PK-like) 524 813 IPR011009 -
Vian5g00042 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Vian5g00042 832 Pfam D-mannose binding lectin 122 201 IPR001480 -
Vian5g00042 832 Gene3D Transferase(Phosphotransferase) domain 1 620 820 - -
Vian5g00042 832 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 59 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00042 Vian-Chr5 681104 683869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00042 524 814 Receptor kinase-like Gene Family AT1G60800 43.813 8.27e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian5g00042 PK_Tyr_Ser-Thr 4.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00042 - - vra:106753716 1590.09