Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00038 ATGACTACACGAATTGCACCTGGTGTGGGAGCCAATTTGCTCGGTCAACATGCCGCTGAGAGGAATCAAGATGCCACTGCTTATGTCGGCAATCTAGACCCTCAGATAAGCGAAGAATTATTGTGGGAGTTGTTCGTTCAAGCGGGTCCAGTGGTTAACGTCTATGTCCCGAAGGACAGAGTGACCAACCAACACCAGGGTTATGGGTTTGTTGAATTCAGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAACATGATCAAGCTTTATGGGAAACCGATCCGTGTGAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGTGCAAACCTTTTCATTGGTAATCTTGATCCTGATGTAGATGAGAAGCTCTTGTACGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCGAAGATCATGAGAGATCCTGAGACAGGAAATTCGCGTGGTTTTGGCTTCATCAGCTATGATTCATTTGAGGCATCTGATTCTGCCATTGAGGCGATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCGGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTGCACAGAAGAGCAGGCCCCATACTTTATTTGCCAGTGGACCTCCGACACTTCCCAATGTTCCTCAGGCTAATGGGGTTGTACCAGTGCCTCCCCGTCCCTTTGCTAATGGGGTCGCTCCTGGTTCGATTCCCGCCCTTCGTCCACCACCCCCTCAAGCTGCTGCGTTCCAGCCTATGCCAGTACCTGGACAACCAACCTGGCATCCGCAACAGCCTATGCCACCTCCACCTCAAATTCAGCAGTTCAGGCCACCACACCCTGGTATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCCAGGCCTCTTCCACCACCAGCAGTAATGGGAAGTCAGCCACCACCTGTCTGGCGTCCGCCACCACCACCCCAGCATCAGGGTGGACGGCCTATGCCATACCCTCAGTCTATGCCTCCGCCACCACCTCCCCAGTAA 1074 0.5028 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNVPQANGVVPVPPRPFANGVAPGSIPALRPPPPQAAAFQPMPVPGQPTWHPQQPMPPPPQIQQFRPPHPGMQQMPPPPQAPPRPLPPPAVMGSQPPPVWRPPPPPQHQGGRPMPYPQSMPPPPPPQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00038 357 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 350 - -
Vian5g00038 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Vian5g00038 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Vian5g00038 357 CDD RRM1_SF3B4 28 100 IPR034158 -
Vian5g00038 357 FunFam splicing factor 3B subunit 4 109 200 - -
Vian5g00038 357 CDD RRM2_SF3B4 111 193 IPR034159 -
Vian5g00038 357 MobiDBLite consensus disorder prediction 193 238 - -
Vian5g00038 357 Gene3D - 16 106 IPR012677 -
Vian5g00038 357 MobiDBLite consensus disorder prediction 251 357 - -
Vian5g00038 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Vian5g00038 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Vian5g00038 357 FunFam Splicing factor 3b subunit 4 16 108 - -
Vian5g00038 357 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Vian5g00038 357 Gene3D - 107 204 IPR012677 -
Vian5g00038 357 MobiDBLite consensus disorder prediction 208 232 - -
Vian5g00038 357 SMART rrm1_1 113 187 IPR000504 GO:0003723
Vian5g00038 357 SMART rrm1_1 26 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00038 Vian-Chr5 644214 649717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00038 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 1.64e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00038 K12831 - gmx:100791039 560.836