Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00033 ATGTTGCCCACTAACCGTCAAAACCGACAAGAGTGGGGGGAGAGAGCAATCCTCTGCATGGAGTCCACCTACGCCCCCAGAAGGCATCTCCGACCAGATATTGCCACTGTGGTGTGGGTGAAGATTGAGGAAGAAGCATTGAAAATGGAAAGAGAGTTGGAGAGAGGGTACGTGAAGAAGGGACCATGGAGCAGAGAAGAAGATGAAGTTCTTCTGAGACATGTCAGAAATGGATGCAAGTTTTCGGCAGAAGAAGAGAGATTGGTGATAGAAATGCAGACACAGTTTGGGAACAAATGGGCCAAAATTGCAACATATTTGCCGGGGAGAACAGACAATGATGTGAAAAACTTTTGGAGCAGTCGGAGAAAAAGGTTGGAGAGGATGTTGCAGAAGCCAACAACGTTAAAGTTGCAGAAAAGCAAGGGAAAAACTCCTCTTACTCAAGTGCTAGCGGATAAGGCTCCTCCATGCAGTTCAAACCAGGTGGAGGAAAACCTTTGTTACACTACTTCCTACATGGGAAACACCGAGGTGTTCGAGATGATCAACCTTCAAGATTTGGTAAAGCCAAACTATGAACAGATGGAAAATGATTACTTGAGTGCAGTTGAGGTTGAGGCCACCCATCTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGAACAACTTCCCTCTGCTCCCTGAGCCACTAATCGACTTTCCACTCTTCCCAGAGTGCCAGGACCTTCTTCCAGAGACCTTTGATCCAAATTTTATTGATGGGTTCGATGAGAAGAAGTGCTCAGAATGCGTATGCAGCCAGAAGCTTGGGACCGGGTTGCCTACTCTTGGATTGGAGGAAAATTATCAAATTACAACTTCAAAAGTCTTATTCAAGGACTTCCCAAGTGAGATTTTTGAATACTTTGAGCAGATTCCAACCTCAACAAAACAATGA 942 0.4522 MLPTNRQNRQEWGERAILCMESTYAPRRHLRPDIATVVWVKIEEEALKMERELERGYVKKGPWSREEDEVLLRHVRNGCKFSAEEERLVIEMQTQFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERMLQKPTTLKLQKSKGKTPLTQVLADKAPPCSSNQVEENLCYTTSYMGNTEVFEMINLQDLVKPNYEQMENDYLSAVEVEATHLHTVPSFESSSGNNFPLLPEPLIDFPLFPECQDLLPETFDPNFIDGFDEKKCSECVCSQKLGTGLPTLGLEENYQITTSKVLFKDFPSEIFEYFEQIPTSTKQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00033 313 Pfam Myb-like DNA-binding domain 60 120 IPR001005 -
Vian5g00033 313 CDD SANT 80 119 IPR001005 -
Vian5g00033 313 ProSiteProfiles Myb-like domain profile. 55 123 IPR001005 -
Vian5g00033 313 Gene3D - 80 149 - -
Vian5g00033 313 SMART sant 77 125 IPR001005 -
Vian5g00033 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Vian5g00033 313 PANTHER TRANSCRIPTION FACTOR DUO1 52 76 - -
Vian5g00033 313 SUPERFAMILY Homeodomain-like 58 119 IPR009057 -
Vian5g00033 313 FunFam Transcription factor GAMYB 79 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00033 Vian-Chr5 615831 617595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00033 48 309 MYB Transcription Factor Family AT3G60460 32.166 1.23e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian5g00033 Myb_DNA-binding 4.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00033 K09422 - gmx:121173231 382.489