Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00032 ATGTCTGAAGGCTATTCCTGCGGCTGCTCCGACTCCGACTCTTCTTGCGGCTGTTGGTCCACCACCGCCAGCGCCGCCGCCACCAGATCTGAGGCTTCAACCGAACTCAGACTCTACAGAGCCTTCATCTTCTGTGTCCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTCTACCTCCGACCGCGAACCAGGCTCCATTGGATCACCAACTTTGGTCTTCCCAACAACGACAACGACCACAACCACAATGCCATCTCCACTGCTGAATTGGGCTTGAACAAGGAACTCAGAGAGATGTTGCCCATTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGACACCCAATGCTCAGTGTGCCTTTTGGACTACCAGCCAGAGGATAGGCTTCAACAGATACCTGCATGTGGCCACACATTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCTTACTAACCATAGCTAAATCTTCCACACAGACATCTGATATGCAGTCACAGTCACAGAACAATGAAGAAGCACAAGCCGTGGAATTATCTGAATCAAGATCTACTATGCATACAGAAACCACTGTCCTCCGAAATGTCTCTGGAGAAGTTGCAATCAGCGCTCCCTGCATTGATGTTGAAAGGCAAAATGAGCAAGACAATCAATAA 699 0.4907 MSEGYSCGCSDSDSSCGCWSTTASAAATRSEASTELRLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWITNFGLPNNDNDHNHNAISTAELGLNKELREMLPIIVYKESFSVKDTQCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTIAKSSTQTSDMQSQSQNNEEAQAVELSESRSTMHTETTVLRNVSGEVAISAPCIDVERQNEQDNQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00032 232 PANTHER RING-H2 FINGER PROTEIN ATL16 33 193 IPR044600 GO:0016567|GO:0016740
Vian5g00032 232 FunFam RING-H2 finger protein ATL7 85 167 - -
Vian5g00032 232 SMART ring_2 120 161 IPR001841 -
Vian5g00032 232 Pfam Ring finger domain 119 162 IPR001841 -
Vian5g00032 232 SUPERFAMILY RING/U-box 104 168 - -
Vian5g00032 232 CDD RING-H2_EL5-like 119 162 - -
Vian5g00032 232 MobiDBLite consensus disorder prediction 174 202 - -
Vian5g00032 232 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Vian5g00032 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00032 Vian-Chr5 611130 613349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00032 26 198 C3H Transcription Factor Family AT4G10150 51.412 1.75e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00032 K19039 - gmx:100794211 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00032 5 611130 613349 Vian5g00032 5 611130 613349 ECH