Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00027 ATGGAGATGGAGAGGTTCAGCAGTCAGCGGTGGAAACCTACTGATGATCAGGTCAAAATGATGGCCAATATCTTCAACCACGGGGTCACACATCCCAGCAGAGCCCAAGTCGCCGAGATTGCATCTCGACTCAATTCCTTCGGAGAAGTCAGTGAATATAATGTACACTGCTGGTTCAACAATCATAGTAACCGGATCAGGCGCTGGCAAGCGGAATTAGACCCCACTGGCACCGTATTTTCTCAGCTGCCGCTGTACATGTATGAATACGGCTGGGTAATTATGAAGGCGCCAAGGCTGCTGGATTTGTTCCCCGTTCCTATCATCATCGACGATGACAGGGACGAACGACAAATCCCTCAACCCATGCCTCTCGCATTCCGAACCAGAGCTCCCTCGACGGAGCTCTCCCTTAGGCCACCACAACCCGTTCGAGAATTTTTCCGTTAA 450 0.5111 MEMERFSSQRWKPTDDQVKMMANIFNHGVTHPSRAQVAEIASRLNSFGEVSEYNVHCWFNNHSNRIRRWQAELDPTGTVFSQLPLYMYEYGWVIMKAPRLLDLFPVPIIIDDDRDERQIPQPMPLAFRTRAPSTELSLRPPQPVREFFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00027 149 SMART HOX_1 6 73 IPR001356 GO:0003677
Vian5g00027 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
Vian5g00027 149 CDD homeodomain 10 70 IPR001356 GO:0003677
Vian5g00027 149 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian5g00027 149 PANTHER WUSCHEL-RELATED HOMEOBOX 13 7 72 IPR044559 GO:0003700
Vian5g00027 149 Gene3D - 8 73 - -
Vian5g00027 149 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00027 Vian-Chr5 498782 499328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00027 7 72 Wox Gene Family AT5G59340 39.394 4.63e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian5g00027 Homeodomain 7.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00027 - K11674 vum:124821070 268.085