Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00008 ATGAATGTTACAGATTCTAGATTGCATAACCTGTCAAGGACATATTATACTCAGATTATATTGCCTGTAGTTGAAGCAAAGATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGTAAGAATCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTACGAGTGGCTTGATCCCTCCATAAAGAAGACTGAGTGGACTAGAGAAGAGGATGAGAAGTTACTTCATCTTGCTAAGCTCATGCCCACTCAGTGGAGAACAATTGCTCCAATTGTAGGTCGTACACCTTCTCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCCTGTATAAAAGATGAGAACTATGAGCCTGGTGATGATCCTCGAAAATTGCGTCCTGGGGAGATTGATCCAAACCCCGAGTCAAAACCTGCACGGCCTGATCCTGTTGATATGGATGAGGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGATTAGCCAACACAAAGGGAAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCAAGGAGGCTTGCTTCCCTACAAAAGAAGAGGGAATTGAAGGCGGCTGGAATTGATATCCGGCAGCGAAAGAGAAAAAGGAAAGGAATAGACTACAATGCGGAAATTCCATTTGAGAAAAGGCCTCCTCCAGGATTTTTCAATGTTGCAGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAGGGGAAAAGGAGGGTTGATATTGAGGCACAATTAAGAAAGCAAGACATTGCTAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCCATATTGCATGCCAACAAATTGAATGATCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTTCCACCACCCCAGATATCTGATCAAGAATTGGATGAAATTGCTAAGTTGGGTTATGCTAGTGACCTTGCAGGGAGTCAGGAACTTACTGAAGGTAGTGGTGCTACACATGCTCTTCTGGCTAATTATGCACAGACACCCGGTCAAGGAGTGACTCCTTTGCGAACCCCTCAGAGAACACCATCTGGTAAAGGAGATGCTATTATGATGGAAGCGGAAAATCTTGCCAGGTTGAGGGAGTCTCAAACACCATTGTTGGGAGGAGAGAATCCGGAGTTGCATCCTTCAGATTTTTCTGGTGTCACTCCTAAGAAAAAAGACATTCAGACTCCAAATCCAATGCTGACCCCATCTGCAACTCCTGGAGGTGCAGGCCTCACTCCAAGAATTGGTATGACACCAACAAGAGATGGTTTTTCTTTTAGCACGACACCAAAGGGGACTCCTTTGAGGGATGAACTACGTATTAATGAGGACATGAATATGCATGAAAGCACTAAACGTGTGCTGCAGAGACAGGCTGATATGAGAAGAAGTCTGCGTTCTGGTTTAGGAAGCCTTCCTCAGCCCAAGAATGAGTACCAAATAGTGATGGAACCAGTCACAGAAGATACCGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGACAGGATAGCTAGAGAAAAAGCAGAAGAAGAGGCAAGACAGCAGGCAGTACTTAGAAAACGATCAAAGGTCCTTCAACGGGAACTTCCTAGGCCCCCTGCTGCTTCATTGGAGCTTATAAGAAATTCCTTAATTAGATCTGATGGGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAGGCTGATGAGATGATTAGAAAGGAGCTTCTAACTTTACTGGAGCATGACAATGCTAAGTATCCGCTTGATGATAAAGTGAATAAGGAGAAAAAGAAAGGAGTCAAGCGATCTGCAGATTTGTCTGCGGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAAGTCCAATATCTTTGTGCCGCAATGGGACATGAAAATGAGCCCCTTGAAGAATTTATTGAAGCACATCAAACCTGCCTCAATGATCTTATGTACTTTCCTACCCGTAATGCATATGGTCTCTCCAGTGTTGCTGGGAACATGGAAAAACTAGCTGCTTTGCAAAATGAATTTGAGAATGTGAGAAAGAAATTGGATGATGATAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGACTGTTATCACACAAGGCTACGAGATGAGAGCAAAGAAAAGTATCTGGCAGCAAATTGAGGCCACTTTCAAGCAGATGGATATAGCTGCAACCGAGTTAGAATGCTTTAAAGCTTTGCAAAATCAGGAGCAGTTAGCAGCATCCCACAGGATAAACAATTTGTGGAGTGAAGTACAGAAGCAAAAGGAACTTGAAAAAACTTTGCAAAACAGGTACGGGAGTCTAATTGAAGAGCTGGAGAAGATGCAAAATATCATGAACCAATCCAGATTAAAGGCAGAGCAGCAAAAAGAAATTGAAGCAAACAATGCTCATGCTGAGACCAAAGTCAATGAAACTGATGTGCAGGATACCGGGAGTATTGTACCTCACTCAGCAGAGGATGGAAATGCTCAAGCAATAACAGTCGAGTCATCACATGATGGAACTTCTGACCAGCAAGTTGAGATTATGCAAGACAAGTCGACTTCTAGCCCCAGCCATGACATGAATGTGGATTCTGATAACATGCATACAATACATGACAGTGATGGTAAATTAGCAAATGCTTCACCAGCTGATGAGAATGTTGTTGAAGAAGTGGAAGGTAGTAGCCCTACTGGTGGTTATACTGACAATGAGGAGAACGTGTCAGAAATGGGTGCTTCAATGGAAATAAATAGCCCCAATCAAGATGTAGTTGCGAATGCTGTAACCACAGGGGAGAGCAGCATGGAAGAAACCAATGCTGTTACGGAGGAGACAAATTAG 2982 0.4333 MNVTDSRLHNLSRTYYTQIILPVVEAKMRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACIKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFNVADEDRPVEQPKFPTTIEELEGKRRVDIEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELTEGSGATHALLANYAQTPGQGVTPLRTPQRTPSGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKDIQTPNPMLTPSATPGGAGLTPRIGMTPTRDGFSFSTTPKGTPLRDELRINEDMNMHESTKRVLQRQADMRRSLRSGLGSLPQPKNEYQIVMEPVTEDTEEPEEKIEEDMSDRIAREKAEEEARQQAVLRKRSKVLQRELPRPPAASLELIRNSLIRSDGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDDKVNKEKKKGVKRSADLSAVPVIEDFEEDEMKDADKLIKEEVQYLCAAMGHENEPLEEFIEAHQTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRKKLDDDKEKMVRLEKKVTVITQGYEMRAKKSIWQQIEATFKQMDIAATELECFKALQNQEQLAASHRINNLWSEVQKQKELEKTLQNRYGSLIEELEKMQNIMNQSRLKAEQQKEIEANNAHAETKVNETDVQDTGSIVPHSAEDGNAQAITVESSHDGTSDQQVEIMQDKSTSSPSHDMNVDSDNMHTIHDSDGKLANASPADENVVEEVEGSSPTGGYTDNEENVSEMGASMEINSPNQDVVANAVTTGESSMEETNAVTEETN 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00008 993 SUPERFAMILY Homeodomain-like 60 133 IPR009057 -
Vian5g00008 993 Coils Coil 194 214 - -
Vian5g00008 993 FunFam CDC5 cell division cycle 5-like 32 86 - -
Vian5g00008 993 FunFam CDC5 cell division cycle 5-like 87 147 - -
Vian5g00008 993 MobiDBLite consensus disorder prediction 140 176 - -
Vian5g00008 993 MobiDBLite consensus disorder prediction 369 388 - -
Vian5g00008 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 134 IPR017930 -
Vian5g00008 993 MobiDBLite consensus disorder prediction 881 910 - -
Vian5g00008 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Vian5g00008 993 Coils Coil 809 843 - -
Vian5g00008 993 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 28 830 IPR047242 GO:0000398|GO:0000974
Vian5g00008 993 Gene3D - 87 141 - -
Vian5g00008 993 MobiDBLite consensus disorder prediction 405 539 - -
Vian5g00008 993 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Vian5g00008 993 CDD SANT 37 80 IPR001005 -
Vian5g00008 993 Gene3D - 32 86 - -
Vian5g00008 993 MobiDBLite consensus disorder prediction 474 498 - -
Vian5g00008 993 CDD SANT_CDC5_II 82 133 IPR047240 -
Vian5g00008 993 Pfam pre-mRNA splicing factor component 433 681 IPR021786 -
Vian5g00008 993 MobiDBLite consensus disorder prediction 881 952 - -
Vian5g00008 993 ProSiteProfiles Myb-like domain profile. 81 130 IPR001005 -
Vian5g00008 993 SMART sant 33 82 IPR001005 -
Vian5g00008 993 SMART sant 85 132 IPR001005 -
Vian5g00008 993 MobiDBLite consensus disorder prediction 426 440 - -
Vian5g00008 993 Coils Coil 709 743 - -
Vian5g00008 993 Pfam Myb-like DNA-binding domain 37 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00008 Vian-Chr5 100091 104655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00008 28 870 MYB-Related Transcription Factor Family AT1G09770 75.561 0.0 1253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian5g00008 Myb_Cef 1.9e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00008 K12860 - gmx:100801352 1598.56