Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02623 ATGGAATATGGAGGGTTCTCAGATATTTTTGCCCCAGAAACGGAGTTTATGGATGAGCTATTTGTAGAAGGATGCTGGGTGGAAACAAGGGTTGGGTGTGGCACGGAGGCTTCAAAGTGGAACAGGAGCATGGAGTCGAATGGGGCGCACATAATATTTGAGGAAGAATCAGAGGCGGAAAGTTTGATGGTCGGGAAGAGATGGTGGATTGGACCAAGGGGGAATCCGGGGCCATCTTCGTCTGTGAAAGAGAGATTAGTGGTTGCGGTTGGGTACTTGAAAGAATACGCCAAGAACTCCAATATGGTGATTCAGGTATGGGTCCCCGCCCGGAGAGGATGTGAAGTAGGGATTCATCACCATCAGGATTTCCCATACACCCTCGACTATACTAACAATGGGGATGCAACAGGATCCTTTCAGTTTCACGAGGACTGGCTTTCTGATCACTGGCCTCCCAACATTCGCTTCCTCAGAACTCACGACTACACCCGCCTTCACCACTACGATCTACGTCCTGGATCTCTCGCCCTTCCCGTCTTTCAGAGAGGCACTGGAATTTGTCTCGGTGTTGTCGACATTCTCATGCCCAACAACGTCAACCCGGACCTTCACAACCTTCAGGCGCATGAGTTGCCTTTGGCTCTGACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGCGGGCATTCGAACGATGAGAATTATGTGTCGACTGTGGATCCAGCATGCTTTGTGGCAGATGTAGATGTATTGGGATTCCTGGAAGCGTGCTCTGAGTACCACCTTTTGGGGGGTCAAGGAGTGGTTGGAACAGCCTTCACAACCTCCAAGCCTTGCTTTGCAAATGACATCACTGCCTTCACCAAGGCTGAATATCCTCTCGCACACCATGCAAACATGTTCGGCTTGCATGCCGCTGTGGCCATTCCTCTCCGGAGTGTTTCCTCTGATTTTGTCCTCGAATTTTTCCTCCCAAAGGATTGCCATGACACCCAAGACCAGAAGCAGATACTCAACTCCTTGTCTATGCTGGTGCAGCAAGCTTGCCGGAGTTTGCACGTTGTACTGGACAAGGAGGAGGAGGAGGAGGAATTGGTATCACACCATCATCATCATCATAGCAAAGAAATGGAATCATCATCATGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTGTCCGTGTCTCTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAGGTGACAACCAACGGCAATGAACAGGTATTCTCGGACTTGGAAGGAACAAGCGGTGCTGGTGTCGGTGGCCGCCGGGGTGGCAGGAAATCAGGCGACAAGAGGCGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTAAGACAATACTTTGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGGGTATGTCCTACCACTTTAAAAAGAATATGCAGACAACATGGGATCACGAGGTGGCCTTCAAGGAAAATTAAGAAGGTGGGGCACTCCTTAAGGAAACTTCAACTTGTGATCGACTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTACACCAGTTTTCCAGAGTTGAGCTCTGCCAATGGTGTTTCCGAATCACCCAAGATAAACAGTGATAATTCCAAGTTTTATTCCGAAAATGGGTTGTTTAGTAACCAAGGAGTTACTTCCACTTCGTCTTGCAGTCAGAGTTGTAACCCCAGTTTGAACCAATCAACCACTCTGATCAACAGCAACAATAATAACATCCCTGAGATTATTCTGATGTCAGATAAGCAATCAGTAGTTGGCGCATCAATGCAAGTCCACCATCCTCCTATTCCCATTTCCATTCCCATTCCCATTCAAAGCCTGGATGCTCTACCTCCCCTGCCCCAAACCAGCAGTGTCTGGAACACAGGCGGTGGTACTTTCAGGGTGAAAGCTACTTTTGGAGATGAAAAAATTCGTTTTAGCTTGCAACCAAATTGCGGATTCAGAGATTTGCAGATGGAAATTGCAAGACGTTTCAATCTGAAGGAGATGAGCAAAATTCAGGTGAAGTATTTGGACGATGCTCAAGAGTGGGTTCTTTTGACATGCGATGCAGATCTTGAGGAGTGTAAAGACATAAATAGATCATCTCAGAGCCGCACAGTTAGACTATTCCTCTTTCATGCTTCGCCACTAAATCATTCAACTAATGCATTTGGCAGCACCAGCCCCACTTAA 2244 0.4813 MEYGGFSDIFAPETEFMDELFVEGCWVETRVGCGTEASKWNRSMESNGAHIIFEEESEAESLMVGKRWWIGPRGNPGPSSSVKERLVVAVGYLKEYAKNSNMVIQVWVPARRGCEVGIHHHQDFPYTLDYTNNGDATGSFQFHEDWLSDHWPPNIRFLRTHDYTRLHHYDLRPGSLALPVFQRGTGICLGVVDILMPNNVNPDLHNLQAHELPLALTWAPCIQQGKSGCGHSNDENYVSTVDPACFVADVDVLGFLEACSEYHLLGGQGVVGTAFTTSKPCFANDITAFTKAEYPLAHHANMFGLHAAVAIPLRSVSSDFVLEFFLPKDCHDTQDQKQILNSLSMLVQQACRSLHVVLDKEEEEEELVSHHHHHHSKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNGNEQVFSDLEGTSGAGVGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSANGVSESPKINSDNSKFYSENGLFSNQGVTSTSSCSQSCNPSLNQSTTLINSNNNNIPEIILMSDKQSVVGASMQVHHPPIPISIPIPIQSLDALPPLPQTSSVWNTGGGTFRVKATFGDEKIRFSLQPNCGFRDLQMEIARRFNLKEMSKIQVKYLDDAQEWVLLTCDADLEECKDINRSSQSRTVRLFLFHASPLNHSTNAFGSTSPT 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02623 747 Gene3D - 649 731 - -
Vian4g02623 747 CDD PB1_NLP 649 730 IPR034891 -
Vian4g02623 747 ProSiteProfiles PB1 domain profile. 648 731 IPR000270 GO:0005515
Vian4g02623 747 PANTHER PROTEIN NLP8 60 203 IPR045012 GO:0003700
Vian4g02623 747 Pfam RWP-RK domain 455 502 IPR003035 -
Vian4g02623 747 Pfam PB1 domain 648 730 IPR000270 GO:0005515
Vian4g02623 747 ProSiteProfiles RWP-RK domain profile. 441 522 IPR003035 -
Vian4g02623 747 SMART PB1_new 648 731 IPR000270 GO:0005515
Vian4g02623 747 MobiDBLite consensus disorder prediction 423 451 - -
Vian4g02623 747 SUPERFAMILY CAD & PB1 domains 638 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02623 Vian-Chr4 42580795 42583442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02623 3 744 NLP Transcription Factor Family AT2G17150 38.317 9.27e-178 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian4g02623 PB1 4.4e-17 CL0072