Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02622 ATGGACGCCGCAAAGGAAAACCGCCTGCCCTCTTCAGATCTTCAAGGGCATCCAAGAATGGAGGAGAATCTGAAGGCCCTCCATCACCGGTTGCCTCTCCGTAGCATCAATCAGAATCTTATGCCTAACAGAAGCCCTGTTCATTCCCGCAAGAGCAAAGGACACACAGTTCTGCATCACCAACCCCCTCAGCCTCATGCAACTAAGAAACAGAACATGTTGGCTCCCAACCCAAGCTACACCTTAGATTGTGAAATCATAGCTATCGACGACAACGATGAGGATGCCAGTGACAATGCAGTTCCAGAATTCGTCAAGCATACTGAAGCCATGCTCGACGAAATAGACAGGATTGAGGAAGTTGAAATGGAAGATGTGCAGGAACCTGTTTTAGACATCGACGCCTGCGATAGGACAGATCCACTTGCAGTTGTTGAGTACATCGATGATATCTACAGCCTCTACAAGAAAATCGAGGATTCGAGCTGTGTCTCTCCAAATTACATGACTAATCAATTTGACATTAATGAGAGGATGAGAGCCATTCTTGTTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACATTGTTCCTTACTGTCAATCTCATCGACAGGTTCCTGGAGCGTCAGTCAATGATCAGAAAGAAACTTCAGTTAGTCGGCGTAACAGCTATGCTAATAGCTTGTAAGTACGAGGAGGTCTCAGTCCCAACCGTTGAGGATTTTATTCTGATAACAGACAAGGCATATACAAGAGATGAAGTTTTAGCTATGGAGAAATTGATGATGAACAATTTGCAATTCAACTTGTCTGTGCCTACTCCATACATGTTCATGAGAAGATTTCTAAAGGCAGCTCATTCTGATAAAAAGCTGGAGCTCTCGTCCTTCTTCTTGATTGAGCTTTGCTTGGTGGAATACAAAATGCTGAAGTTTTCACCATCTTTGCTAGCTGCTGCCGCCATTTACACAGCTCAATGTAGCATGTACCAGTTTAAGCAATGGACTAAGACCAGTGAGTGGTATACTGATTACTCAGAAGAGCAGCTTCTAGAATGCTCAAGGCTGATGGTTACTTTCCATCGGAAAGCTGGATCAGGAAAACTCACTGGTGTATATAGAAAGTACAGTACATGGAGATATGGCTGTGCCGCAAAAGTAGAGCCAGCTCTGTTTTTACTGGATAATTAA 1206 0.4378 MDAAKENRLPSSDLQGHPRMEENLKALHHRLPLRSINQNLMPNRSPVHSRKSKGHTVLHHQPPQPHATKKQNMLAPNPSYTLDCEIIAIDDNDEDASDNAVPEFVKHTEAMLDEIDRIEEVEMEDVQEPVLDIDACDRTDPLAVVEYIDDIYSLYKKIEDSSCVSPNYMTNQFDINERMRAILVDWLIEVHYKFELLEETLFLTVNLIDRFLERQSMIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRDEVLAMEKLMMNNLQFNLSVPTPYMFMRRFLKAAHSDKKLELSSFFLIELCLVEYKMLKFSPSLLAAAAIYTAQCSMYQFKQWTKTSEWYTDYSEEQLLECSRLMVTFHRKAGSGKLTGVYRKYSTWRYGCAAKVEPALFLLDN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02622 401 SMART cyclin_7 282 364 IPR013763 -
Vian4g02622 401 SMART cyclin_7 185 269 IPR013763 -
Vian4g02622 401 FunFam G2/mitotic-specific cyclin-1 265 390 - -
Vian4g02622 401 PANTHER CYCLINS 98 383 IPR039361 -
Vian4g02622 401 CDD CYCLIN_AtCycB-like_rpt2 278 394 - -
Vian4g02622 401 Gene3D - 150 391 - -
Vian4g02622 401 MobiDBLite consensus disorder prediction 39 73 - -
Vian4g02622 401 SMART Cyclin_C_2 278 395 IPR004367 -
Vian4g02622 401 SUPERFAMILY Cyclin-like 140 275 IPR036915 -
Vian4g02622 401 ProSitePatterns Cyclins signature. 180 211 IPR006671 -
Vian4g02622 401 Pfam Cyclin, C-terminal domain 278 393 IPR004367 -
Vian4g02622 401 Gene3D - 164 276 - -
Vian4g02622 401 CDD CYCLIN_AtCycB-like_rpt1 128 273 - -
Vian4g02622 401 PIRSF Cyclin_A_B_D_E 4 401 IPR046965 GO:0016538|GO:0044772
Vian4g02622 401 SUPERFAMILY Cyclin-like 277 394 IPR036915 -
Vian4g02622 401 Pfam Cyclin, N-terminal domain 150 276 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02622 Vian-Chr4 42557331 42559609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02622 34 399 Core Cell Cycle Gene Families AT1G20610 59.358 5.32e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02622 K21777 - gmx:100812029 624.394