Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02608 ATGGTGAATGGCGATCACAACCTGCCAAATCCAACCATGAAGCAATCCAACGTTAACGTTTCCGATCATCAGAGCATGTCCAAGAACCACATCTCACCCAACCGTCGCAGGTTTCGGTCCAGAAGGAGGAAAACCACCGCTGCTTGCCCCCTCTCATCGCTCAACCTCCGCGCATACGACATCGACGGCACCAACAGTCCCTATTACAAGGGTCTGACTGACCAGTCCCTTGCGATTGTGAACACCATACCCTCCTGTGCTCAACCTCATCCTCACGCCCCTTCCTCCTACCTCCTTTCCAGTCCTTATTACAAAGGCCTTACGGACTATTCCCTTGTTATTCGTCCCTGGACTCCTCACAACCATCCTCTTCCTTTTCCCCACAACTCCCTCTCCTACACCCCTAGTCCTTACTATGCAGGTCTTCTCACTCACTACACCCTTCTCTTTCATGCACGCTCGCTTCAACCTTCTTTCACTACAAACCTTCCAAACATCAAGAACCCTACTTTGAAGGACTTGATGCTCGATCCTCATCACGTTGGCTTTGTTACTCAAGAAACTGCTCAAGTTGGCAATCATGCATTGGAGGAACTTGGGGAGAAAACTGCTGCTGTGGTTGATCAAGAGAATGACGTTGATGTTGAGATGGTGATGACTGAAGAGAAGGCCTTGGGGGAGAGTGTATTCGAGCAGGCTACTCATGAGGTTGAGGGTGTGTCAGAAGAAGCAATCTTTGATACAAAGTTGATGAGTGATGATGATGTTGTTGAAGAGAAGCCATTGGGGGAGAAATCATCGGAAAAGAGCGAGATGGATTTGTGGAAGGAAGAGGAAGTGAAAGAAGTGTTGCCTCTTGTTTCATCAGAAGCAGTTGTTGTTTCGTCTGAATCTGATTATACATGGGCAGCCAAATACCAACCCATGGCCTTGGAAGAGTTCATCTGCAACAAAGACATAGCAAGTCAACTCAAAACAATGGTAGAAGGTGGTTGTGGGTGCAGCCACTTTATATTTGAAGGACCACCAAGTGTGGGGAAGAGATCCATGATAAGGGCTATGCTTGGAGAGGTATTCGGCTCCGACAGGGTCCAGGTCGAAGAAGAATATAAAAACTTCATTTTGAAGGGAGAAATGATTGATAGTGTGCAAGTGCGCGTAAAGAAATCACTCCATCATGTCGAGGTGAATCTGTCAGAGACAAATGGATACGAAAAACATGTAATTGTTGATTTATTCAAGGAAACATATGGGCAGGTGATAGATAACTCGCAACCTTGTTATCCAGAAAACTGCAAAGCAATCGTTTTGTACGAGGCGGAGAAGCTGTCGATAGAATCGTTGTTGTATATTAAGTGGCTGCTAGAGAAGTACGAAGGGTGTAATAAGGTTTTCTTCTGTTGCTCTGATGAATCTAAGCTTCAACCTGTGAAGCCACTTTGCATCACTCTCCGCCTTTCATCGCCATCAACCCAAGAGCTAGCTACGATTTTGGAAAACATTGCAATAGCAGAAGGAATACAGTTATCACGCCACTTGATCGATACCATAATTTTGAGGTCCAACAACAACCTACGCCAGGCCATTCGTTCGTTAGAGGCCACTTGCCGAAATAGGGATGCTGTCAAAGAGAACGACGTGATTCTAACTGGTTGGGAACAAGATATTCTGGATATTGCCAAAAAAATAATCCAAGAACAAAGTCCACGACAGCTGTACGCCATTCGTAGAAAGCTACGAAGTCTTATGAGCCATGATGTTCCTCCTGAGTTTATTTACAAGTCTTTGGTACCAGAATTAACCACTCTTGTTCATCACTCGCTATGCCCAGGGATTGCCAAACTCGACAGGGACTTCATGAGACCCAGTGAAATCAAATTTGAAACCATGAAGCAGCACTTCTGTCATGTTCCAAAACAGTCCGAATCTGATGAGAAGAACACTGATTCAACAAAAAAGAATGCCTTAACTTACTTAAAAGTAGAAGAGTTTATAGCGAAAGTGATGAGCTGGTACAAGAATTGGTCTGAAAAAGACAGTAAGCTGTAG 2049 0.4485 MVNGDHNLPNPTMKQSNVNVSDHQSMSKNHISPNRRRFRSRRRKTTAACPLSSLNLRAYDIDGTNSPYYKGLTDQSLAIVNTIPSCAQPHPHAPSSYLLSSPYYKGLTDYSLVIRPWTPHNHPLPFPHNSLSYTPSPYYAGLLTHYTLLFHARSLQPSFTTNLPNIKNPTLKDLMLDPHHVGFVTQETAQVGNHALEELGEKTAAVVDQENDVDVEMVMTEEKALGESVFEQATHEVEGVSEEAIFDTKLMSDDDVVEEKPLGEKSSEKSEMDLWKEEEVKEVLPLVSSEAVVVSSESDYTWAAKYQPMALEEFICNKDIASQLKTMVEGGCGCSHFIFEGPPSVGKRSMIRAMLGEVFGSDRVQVEEEYKNFILKGEMIDSVQVRVKKSLHHVEVNLSETNGYEKHVIVDLFKETYGQVIDNSQPCYPENCKAIVLYEAEKLSIESLLYIKWLLEKYEGCNKVFFCCSDESKLQPVKPLCITLRLSSPSTQELATILENIAIAEGIQLSRHLIDTIILRSNNNLRQAIRSLEATCRNRDAVKENDVILTGWEQDILDIAKKIIQEQSPRQLYAIRRKLRSLMSHDVPPEFIYKSLVPELTTLVHHSLCPGIAKLDRDFMRPSEIKFETMKQHFCHVPKQSESDEKNTDSTKKNALTYLKVEEFIAKVMSWYKNWSEKDSKL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02608 682 Gene3D - 551 672 - -
Vian4g02608 682 FunFam Replication factor C subunit 3 300 489 - -
Vian4g02608 682 Gene3D - 300 489 IPR027417 -
Vian4g02608 682 MobiDBLite consensus disorder prediction 1 28 - -
Vian4g02608 682 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 301 620 - -
Vian4g02608 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 547 IPR027417 -
Vian4g02608 682 SUPERFAMILY post-AAA+ oligomerization domain-like 551 602 IPR008921 GO:0003677|GO:0006260
Vian4g02608 682 MobiDBLite consensus disorder prediction 1 46 - -
Vian4g02608 682 MobiDBLite consensus disorder prediction 30 44 - -
Vian4g02608 682 Gene3D - 490 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02608 Vian-Chr4 42459769 42464119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02608 302 675 Core DNA Replication Machinery Family AT5G27740 30.526 2.16e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02608 K10756 - gmx:102664389 771.155