Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02606 ATGGACATTGATCTAGAGGTACCTATATGTGAGCATGAGAAGCTTAATATTGGATCTAGTGGAAATAATCTTACAGATACAACATGTGATATATGTATTGAGGAGCATAAAATCAATCCTTCGTCAATGACTGCACACTGTAAGGAAGTTTTAAGTGAAAAAGATTTCTGCTGTCAGGATCCGGTGGATTTGAATTCTAATCAAGTGGATGCAATTGATAGATTTCCCATTAAAGAACCACAAAATGGCTTGGAATTTGAATCAAAGGAGGCTGCCTATTCTTTCTACAGAGAATATGCTCGCTTAGTGGGTTTTGGCATCACGATAAAAGCCAGTCGACGCTCGAAAAAGTCAGGAAAATTTATTGATATTAAAATTGTTTGTTCTAGATTTGGAAGTAAGCGTGAGTCTGGTACAGCTGTTAATCCACGACCATGTACAAAGACAGACTGTAAGGCTGGAATGCATATGAAGAAGAAGATAGATGGGAATTGGATTATATACAATTTTGTAAAAGAGCACAATCATGAGATCTGTCCCGATGATTTTGTCACGGGACGTAGCAAACAAATAAGTAATCTAGCTTGTCGTAAGAAGGGCATGCAATTGGCTCTAGACGAGGGAGATGTGCAGTTGATCATCGAATACTTTATCTCTATGCAGTGTGAAAATCCAAACTTCTTTTATGCAATAGACCTGGATCAGGATAGACATTTGAGAACTGTATTTTGGGTTGACTCAAAAGGAATATTTGATTATAAAAAGTTTCATGATATTGTGTTGATTGACACTTTTTACCTGAAAAACAAATATAAAATTCCTTTTGTTCCTTTTGTCGGGGTCAACCATCACTTCCAGTACATTTTACTTGGATGTGCACTGGTTGGGGAAGAGTCTGTTTCAGCTTTTATGTGGTTAATGCAAGCATGGCTCAAGGCAATGAGTAACCTACCTCCCGAGGTGATTATCACAGATCAGGAGCAATTCTTGAAAGAAGCTGTCATGGAAGTGTTTCCAGATAAACATCACTGTTTCTGCCTATCACATGTTTTATGTAAAATAACCAAGAATTTGGATTATATCATAAATGAAAATAATAATTTTATGGAAAATTTTGACAAATGCATTCATCATTACTGTTCAGATGAGAAATTTGAAGAGAGATGGTGGAAGTTGATGAATAGAATTGAACTAAAGGATGATGAATTGGTTCGGTCATTGTATGAAGATCGTAAAAAGTGGGCGCCTACATTCATGCGGGACATTTCTTTGGTTGGATTATCAACAATTGTAAGATCTGAGAGTGTATCATCTTTCTTTGACAAGTATATCCGTGTTGATTCTACCTTTGAGGAATTTATTGAACAGTATAAAGTTTTTTCTGTAGACTGTTTTGACATTGAAGCCAAAGCTGACATTGAAACAAAACAAAAGCAACCTACATTAAGATCTTTATCACCTTTTGAGAAGCAGCTATCCGCAATTTTTACTGATGCCATATTTAGAAATTTTCAGTTGGAAATATTGGGAATGATGTCCTGTCATCTGCAGATGGAAACAGAAGGAAGGGAAACTTTGACATTTCTTGTTCATGATTTTGAGAAGCGGAAGAAATTTATTGTTTCTTGGAAGGAAGCAGATTTGTATGTCTGTTGTTCATGTTGTTTATTTCAATACAAAGGTTTTCTATGTAGACATGCGATGCTTGTCCTTCAGAAGTCGGGCATAACCAGCATTCCATCCTATTATATTTTAAAACGATGGACAAAAGATTCAATGGCCGCCGATCAATTTTCTGGTGACATAATTACCAGGACTGCTAATCGAGTTCAACGATTTAATGACCTTTGTAGGCGGGCAATTGTATTAAGTCAAATTGGATCGTTATCTGAAGATACTTACCGTGTTGCATCTCAGGCCATGGAAGAAATGTATAAACACTGTGTGAACACAAAATATTCTGCCAGAAGCACTTCGGATCCCAACAAGTTGGCTCTTGATGCTTTTGATGTTCGAGATAAAAATTATGGCTGCAACAGGGCAAAACCTACTAAGAAAAGGAAGTCATTCAGTAAAAGGGAATCCTCTGATCCAGAAAGAATCAATATCAAGATGATGGATGATCTCAGAAAGAGGGAACAGAGAATTACAAGAGCGCACAACTTCAATAATTGTTACATTTATCAGCAGAACATGCAAACTGTGGACTTAGATTCTAGAGCTTCGACCCTTGATGCTTATTATGGGACTCAGCAGAGTGTGCTTGAAGATGGGCAATTGCATTCCATTGCAAGCCGTGGTCCACATTATGGGATGCAGCACAGGATGCAAAGACCGCTTCAAGGAGAGCTCACTTTCAGAACGCCAACAGTACAAGGGTGTTTTGACCTCCAAGATAGTCTAGAAGCTATAGAAGAACCTGTTAAGGCCTCACAGTTCCATGACATTGCATCAAAGCAACTAGAAGCCGATAAATCACTTCCCTGA 2487 0.3768 MDIDLEVPICEHEKLNIGSSGNNLTDTTCDICIEEHKINPSSMTAHCKEVLSEKDFCCQDPVDLNSNQVDAIDRFPIKEPQNGLEFESKEAAYSFYREYARLVGFGITIKASRRSKKSGKFIDIKIVCSRFGSKRESGTAVNPRPCTKTDCKAGMHMKKKIDGNWIIYNFVKEHNHEICPDDFVTGRSKQISNLACRKKGMQLALDEGDVQLIIEYFISMQCENPNFFYAIDLDQDRHLRTVFWVDSKGIFDYKKFHDIVLIDTFYLKNKYKIPFVPFVGVNHHFQYILLGCALVGEESVSAFMWLMQAWLKAMSNLPPEVIITDQEQFLKEAVMEVFPDKHHCFCLSHVLCKITKNLDYIINENNNFMENFDKCIHHYCSDEKFEERWWKLMNRIELKDDELVRSLYEDRKKWAPTFMRDISLVGLSTIVRSESVSSFFDKYIRVDSTFEEFIEQYKVFSVDCFDIEAKADIETKQKQPTLRSLSPFEKQLSAIFTDAIFRNFQLEILGMMSCHLQMETEGRETLTFLVHDFEKRKKFIVSWKEADLYVCCSCCLFQYKGFLCRHAMLVLQKSGITSIPSYYILKRWTKDSMAADQFSGDIITRTANRVQRFNDLCRRAIVLSQIGSLSEDTYRVASQAMEEMYKHCVNTKYSARSTSDPNKLALDAFDVRDKNYGCNRAKPTKKRKSFSKRESSDPERINIKMMDDLRKREQRITRAHNFNNCYIYQQNMQTVDLDSRASTLDAYYGTQQSVLEDGQLHSIASRGPHYGMQHRMQRPLQGELTFRTPTVQGCFDLQDSLEAIEEPVKASQFHDIASKQLEADKSLP 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02606 828 Pfam FAR1 DNA-binding domain 94 179 IPR004330 -
Vian4g02606 828 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 70 649 IPR031052 GO:0006355
Vian4g02606 828 Pfam SWIM zinc finger 551 573 IPR007527 GO:0008270
Vian4g02606 828 MobiDBLite consensus disorder prediction 678 698 - -
Vian4g02606 828 ProSiteProfiles Zinc finger SWIM-type profile. 537 575 IPR007527 GO:0008270
Vian4g02606 828 SMART 26again6 550 577 IPR006564 GO:0008270
Vian4g02606 828 Pfam MULE transposase domain 259 351 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02606 Vian-Chr4 42450966 42454036 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian4g02606 MULE 6.1e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02606 - - gmx:100802811 1284.63