Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02605 ATGCTGGAGAATATTCAGGCTGTTCCGGCGACGGAATCCGCCCCAGTCGTCAAGCGCTATGCTCCTCCCAACCAGAGAAACCGTTCTGCCAACAGGCGCAAATCATCTGATCGTCTTGATCGGACAAACAGTGTTGGGACTGAGTTAGAAAAGAATCAAGTCGCTCCTTCAAGAAGTGTTCACATTCCAGATCATGGAGATGCTGGTAGCAGTAATCTTATTAACGAAAATCACCATTCAAGATTCATAGCTTTAGAAGGGTGTGGTTGCAGTGCAGCTTCCCAGCTTCTTAATGATCGTTGGGCAGCTGCAATGCAATCCTACAATAATTCCAAAGACTCATCTGACAAGCCAGTCATGTATTCGAGTGGTGCGTCAGCATGGACTCAGCAGCAGTTTAGACCTCCTCAGCAGGTAATCACTTTCCCTTACCTTGTGATTACATTCTCCTTTTCAGGTTATGCAGCCATCTATAATTTTTTGGAAGAACGTTATCTAGATATTTTTGGTCGAAGGGAGAGGAAGAAGAGCAGAGAAATGGTGGTTGGGAGAGTTGCTGTTCCAAATCCTCCCTCCGGTCTGTTCCACAATCCTTCTTCTGCTGCCACCCTCATACCTCCACACATTCGTCTTCTCTCTTTCTCCGCTTCCGCCGCCGCCTCCTCCTCTTCCTCCTCCGCCAATCGCACTCGTCACACGTCCACTACAAAAAGCGATTCTCCCTTCTCAACAGGAAGACCTTCTCGTTCTGGGTCTCGGTCAGGTGGACGAAAACGAGGAGGATGGGATATCATTCCCAGGTTTCCCTCACAAGCCAAATCAACCACTGACACAAACTTCTTCAGTCTCAAGTCATTTAAAGAAATTGGGTGCGCTGACTACATCATTCAATCCCTCCAAAAAATCTTCTTAACGCGCCCTTCCCATGTACAGGCCATGGCATTTGCTCCTGTTCTTAGCGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGCACCAATCATTCAGCGTCTTAGACAAGAAGAACAAGAAGGACGTAGTCAATCCTCTTCGCAAGCTCCTAGAGTGCTGGTACTCGCACCCACTGCAGAGTTAGCCTCTCAGGTCTTGGATAATTGTCGATCCTTGTCAAAATCTGGGGCTCCATTCAAATCTATGGTTGTCACGGGAGGTTTTCGACAACGGACTCAACTGGAAAATTTACAGCACGGAGTTGATGTCTTAATAGCAACGCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGACTTTGAAATGGCTCTTCAATGCCTGATCAATTCTTCACCGGTTGACACACAGTATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCCGACTGCGAAATGATTATGGGGCCTGGTATGCATCGAATAAGTTCTCGCCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCGGATACAGCATTTTTGAACAAGAAAACCGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTTCCAAGAACAATTGTGTTCTGCAACAAGATTGAAACATGCAGAAAAGTTGAAAATTCATTAAGGCGTTTTGATAGAAAAGGAAATCACATGCAAGTTCTACCCTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGCATGGAAGAGTTTACTCGTCCTCCATCAAAAGGAGTCTCCCAGTTCATGATTTGCACTGACAGGGCTTCACGAGGTATTGACTTTGCAGGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTACGTCGTGTTGGAAGAACAGCCAGAGGTGCGAAGGGAGTAGGAAAGGCATTTATATTTGTGGTTGGCAAGCAAGTATCCCTTGCAAGCAAAATAATGGAAAGAAGTCAGAAGGGTCACCCACTACATGATATACCTACGGCATATTAG 2064 0.4525 MLENIQAVPATESAPVVKRYAPPNQRNRSANRRKSSDRLDRTNSVGTELEKNQVAPSRSVHIPDHGDAGSSNLINENHHSRFIALEGCGCSAASQLLNDRWAAAMQSYNNSKDSSDKPVMYSSGASAWTQQQFRPPQQVITFPYLVITFSFSGYAAIYNFLEERYLDIFGRRERKKSREMVVGRVAVPNPPSGLFHNPSSAATLIPPHIRLLSFSASAAASSSSSSANRTRHTSTTKSDSPFSTGRPSRSGSRSGGRKRGGWDIIPRFPSQAKSTTDTNFFSLKSFKEIGCADYIIQSLQKIFLTRPSHVQAMAFAPVLSGKTCVIADQSGSGKTLAYLAPIIQRLRQEEQEGRSQSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGAPFKSMVVTGGFRQRTQLENLQHGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFEMALQCLINSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDGQEKTPDTAFLNKKTALLQLVEESPVPRTIVFCNKIETCRKVENSLRRFDRKGNHMQVLPFHAAMTQESRLASMEEFTRPPSKGVSQFMICTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLASKIMERSQKGHPLHDIPTAY 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02605 687 Gene3D - 267 495 IPR027417 -
Vian4g02605 687 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 687 IPR001650 -
Vian4g02605 687 Pfam Helicase conserved C-terminal domain 532 648 IPR001650 -
Vian4g02605 687 CDD DEADc 295 482 - -
Vian4g02605 687 CDD SF2_C_DEAD 508 659 - -
Vian4g02605 687 SMART ultradead3 303 511 IPR014001 -
Vian4g02605 687 MobiDBLite consensus disorder prediction 1 73 - -
Vian4g02605 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 660 IPR027417 -
Vian4g02605 687 SMART helicmild6 559 649 IPR001650 -
Vian4g02605 687 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 223 685 - -
Vian4g02605 687 Gene3D - 529 681 IPR027417 -
Vian4g02605 687 MobiDBLite consensus disorder prediction 223 251 - -
Vian4g02605 687 MobiDBLite consensus disorder prediction 30 45 - -
Vian4g02605 687 MobiDBLite consensus disorder prediction 223 274 - -
Vian4g02605 687 Pfam DEAD/DEAH box helicase 309 482 IPR011545 GO:0003676|GO:0005524
Vian4g02605 687 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 315 496 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02605 Vian-Chr4 42439259 42448336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02605 283 657 Eukaryotic Initiation Factors Gene Family AT3G19760 27.394 9.84e-31 123