Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02600 ATGTCCAAAGAACTCACCGAAGAGGGTCAACAAAGGAAGGACTACTACGACCCTCCTCCCGCCCCTCTCATCGACCTCGCCGAGATCAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATCGCCACCCTCCTCTTCCTCTATGTCACCGTCGCCACCGTCATCGGTCACAAGAAACAGACCGGTCCTTGTGACGGCGTTGGCCTTCTCGGCATAGCCTGGGCCTTCGGTGGCATGATCTTCGTTCTCGTTTACTGCACCGCCGGCATTTCCGGTGGACACATAAACCCAGCGGTCACTTTTGGCCTCTTCCTGGCGCGCAAGGTCTCGTTGATCCGTGCCGTTCTCTACATTGTAGCACAGTGCCTTGGTGCTATCAGCGGCGTCGGGTTGGTGAAGGCCTTCATGAAGCATCCCTACAACTCCCTCGGCGGCGGTGCCAACTCCGTCAGTTCTGGCTACTCCAAAGGCACTGCTCTCGGTGCCGAGATTATCGGCACATTTGTGCTTGTCTACACCGTTTTCTCTGCCACCGACCCCAAGAGAAGCGCGCGTGACTCTCATGTCCCCGTACTGGATCTTTTGGGTTGGACCGTTCGTGGGAGCGTTGGCGGCGGCGGCATACCACCAGTACATACTGAGAGCAGCGGCTATCAAGGCGTTGGGGTCGTTCCGGAGCAACCCCACGAACTAGCTGTTGACGGAGAAGAGGAGAGGGAGAGAGATAGTGTAGAGGAAGTTTAA 750 0.572 MSKELTEEGQQRKDYYDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIVAQCLGAISGVGLVKAFMKHPYNSLGGGANSVSSGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLDLLGWTVRGSVGGGGIPPVHTESSGYQGVGVVPEQPHELAVDGEEERERDSVEEV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02600 249 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Vian4g02600 249 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian4g02600 249 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian4g02600 249 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian4g02600 249 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian4g02600 249 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian4g02600 249 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 197 IPR034294 -
Vian4g02600 249 Pfam Major intrinsic protein 29 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian4g02600 249 MobiDBLite consensus disorder prediction 220 249 - -
Vian4g02600 249 Gene3D Glycerol uptake facilitator protein. 21 211 IPR023271 -
Vian4g02600 249 SUPERFAMILY Aquaporin-like 28 198 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02600 Vian-Chr4 42394903 42396057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02600 1 244 Major Intrinsic Protein MIP AT4G35100 73.577 4.47e-124 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02600 K09872 - vra:106761912 387.497