Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02589 ATGGGAAGGTCTCCTTGTTGTGAGAAAGCACACACCAACAAAGGAGCATGGACCAAAGAAGAAGACGATCGCCTCATAGCTTACATCAGAGCTCACGCCGGAAGATTGCCGGGGAGAACGGACAATGAGATAAAGAATTACTGGAACACTCACATACGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAACGACTCTCCTCGTCACAATCAACTCCAAGAATCAGCCGGCGCAGCCACCATATCTTTTGCTCCCAAACAAGAGGAAAAGGACAACAACGTGTTGGTTGAGGTTAAGGATTCGAAGAGTCCCACATCGGAACGCTGCCCTGACTTGAACCTCGAGCTAAGCATCAGTCCTCCCCATCACGAACGGGAGGAGGGCGGCGATGAAGAGGAATCGAAGAGTATTGCGAGAAGCCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAACAGCAAAGACTGTAGCTGTGCCCTCAATGCCATCACTGCAAATGCCAACGCTTCTACTGCCACTGGCTACGATTTCTTGGGCTTGAAAACCAACCCTTTGGATTACAGAACCTTGCAAATGAAATGA 597 0.4941 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSPRHNQLQESAGAATISFAPKQEEKDNNVLVEVKDSKSPTSERCPDLNLELSISPPHHEREEGGDEEESKSIARSLCFACSLGLQNSKDCSCALNAITANANASTATGYDFLGLKTNPLDYRTLQMK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02589 198 PANTHER F14D16.11-RELATED 33 133 - -
Vian4g02589 198 MobiDBLite consensus disorder prediction 124 138 - -
Vian4g02589 198 Pfam Myb-like DNA-binding domain 14 51 IPR001005 -
Vian4g02589 198 SMART sant 13 54 IPR001005 -
Vian4g02589 198 SUPERFAMILY Homeodomain-like 9 62 IPR009057 -
Vian4g02589 198 ProSiteProfiles Myb-like domain profile. 9 52 IPR001005 -
Vian4g02589 198 Gene3D - 12 57 - -
Vian4g02589 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 56 IPR017930 -
Vian4g02589 198 CDD SANT 16 52 IPR001005 -
Vian4g02589 198 MobiDBLite consensus disorder prediction 105 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02589 Vian-Chr4 42310183 42311060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02589 1 198 MYB Transcription Factor Family AT4G34990 37.681 1.92e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian4g02589 Myb_DNA-binding 6.9e-07 CL0123