Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02586 ATGCAACAATTTATTACGGGAACTGAAGCAATGCGAAAGGCGATCTCCTTTCTCGTTCAACCCCGATGCCTCCTTCTCGTCATTGTTCTCACAATTTTCTTGATTCTCGCAATATCTGGTTCTAGACGGGTTGAAGAAAAAGTAGAAGAAGAGCCTGAAATTACTGACAGAGTATTCTTGGATGTTGATATTGATGGACAACGTCTAGGTAGGATTGTCATTGGATTATATGGCCAGGTTGTACCAAAAACTGTGGAAAATTTTAGAGCTTTGTGCACAGGGGAAAAAGGAAAGAATGCCAATGGTGTAAAACTTCACTACAAAGGAACACCATTTCATAGGATAATATCAGGTTTCATGTTTCAGGGTGGTGACATTGTCCATCGTGATGGTAGAGGATATGAATCTATTTATGGTGGTACCTTTCCTGATGAAAATTTCAAGATAAAACATTCGTATGCGGGTGTAGTCTCTATGGTGAATTCGGGTCCTGATTCCAATGGCTCACAGTTTTTCATTACCTCAGTGAAGACCGGTTGGTTAGATGGAGAACATGTTGTGTTTGGGAAGGTTGTCCAAGGCATGGATACTGTGTTTGCAATTGAAGGGGGTGCTGGAACCTACAATGGGAAACCTAGAAAGAAAGTAGTAATTGCAGATTCTGGCCTCTGGATAGATACCCAAGAGTCTGTCAGATGA 699 0.4134 MQQFITGTEAMRKAISFLVQPRCLLLVIVLTIFLILAISGSRRVEEKVEEEPEITDRVFLDVDIDGQRLGRIVIGLYGQVVPKTVENFRALCTGEKGKNANGVKLHYKGTPFHRIISGFMFQGGDIVHRDGRGYESIYGGTFPDENFKIKHSYAGVVSMVNSGPDSNGSQFFITSVKTGWLDGEHVVFGKVVQGMDTVFAIEGGAGTYNGKPRKKVVIADSGLWIDTQESVR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02586 232 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 57 222 - -
Vian4g02586 232 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 107 124 IPR020892 GO:0003755|GO:0006457
Vian4g02586 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 91 IPR002130 GO:0000413|GO:0003755
Vian4g02586 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 198 IPR002130 GO:0000413|GO:0003755
Vian4g02586 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 124 IPR002130 GO:0000413|GO:0003755
Vian4g02586 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 155 170 IPR002130 GO:0000413|GO:0003755
Vian4g02586 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 170 182 IPR002130 GO:0000413|GO:0003755
Vian4g02586 232 Gene3D - 44 231 IPR029000 -
Vian4g02586 232 FunFam Peptidyl-prolyl cis-trans isomerase 44 229 - -
Vian4g02586 232 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 59 223 IPR002130 GO:0000413|GO:0003755
Vian4g02586 232 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 62 220 IPR002130 GO:0000413|GO:0003755
Vian4g02586 232 SUPERFAMILY Cyclophilin-like 54 227 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02586 Vian-Chr4 42285215 42289243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02586 70 226 U-box Gene Family AT5G67530 40.506 5.77e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02586 - - vra:106760817 415.231