Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02581 ATGAGCGAGAGTGAGAAGCAGAGGGTAACGGGAAAGGTCAAGTGGTTCAATGATCAGAAGGGATTTGGCTTCATAACCACCGATGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCCGATCCGACGGTTTTCGCAGCCTCGCCCTAGGAGAGTCCGTCGAGTTCCTCATCGACTCCGATTCCGAAGGCCGCACCAAGGCCGTCGACGTCACCGGCCCTGACGAATCGCCCGTGCAGGGCACCCGCGGTGGTGGAGGAGGGGGAAGAGGTGGATACGGCGGCGGCGGTGGTGGTGGAAGAGGTGGCTATGGCGGGGGAGGACGCGGAGGACGAGGTGGATATGGAGGCGGTGGCGGATATGGTGGAGGTGGCTATGGCGGAGGCGGTGGGTATGGTGGAGGTGGTGGTGGTGGAGGGGGTTGCTATAAGTGTGGGGAGACAGGTCACATGGCGAGGGACTGCAGCCAAGGTGGAGGCGGCGGTGGAAGGGAAAGGAGGGTTTGTTTTGGTGAGGTTCTGAAATCATCGGCTAAATACTCTGTTTCCTCTGTTTAA 561 0.6025 MSESEKQRVTGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFLIDSDSEGRTKAVDVTGPDESPVQGTRGGGGGGRGGYGGGGGGGRGGYGGGGRGGRGGYGGGGGYGGGGYGGGGGYGGGGGGGGGCYKCGETGHMARDCSQGGGGGGRERRVCFGEVLKSSAKYSVSSV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02581 186 PANTHER COLD SHOCK DOMAIN PROTEIN 2 112 166 - -
Vian4g02581 186 SUPERFAMILY Retrovirus zinc finger-like domains 136 161 IPR036875 GO:0003676|GO:0008270
Vian4g02581 186 ProSiteProfiles Zinc finger CCHC-type profile. 143 158 IPR001878 GO:0003676|GO:0008270
Vian4g02581 186 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Vian4g02581 186 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Vian4g02581 186 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Vian4g02581 186 Gene3D - 1 85 IPR012340 -
Vian4g02581 186 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Vian4g02581 186 Pfam Zinc knuckle 142 158 IPR001878 GO:0003676|GO:0008270
Vian4g02581 186 Gene3D - 135 172 - -
Vian4g02581 186 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Vian4g02581 186 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Vian4g02581 186 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Vian4g02581 186 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Vian4g02581 186 MobiDBLite consensus disorder prediction 65 100 - -
Vian4g02581 186 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Vian4g02581 186 SMART csp_8 10 75 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02581 Vian-Chr4 42254791 42255631 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vian4g02581 CSD 1.8e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02581 - - gmx:100820359 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02581 4 42254791 42255631 Vian4g02581 4 42254791 42255631 ECH