Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02579 ATGGGTGAGACTCGCGAGGTTGAGCGCGTTGGTAGCGTTGGGATTGACGAGAAGTGTCGGGTGGTGCGGTGCGTCAGGTACGTAAGATGGGTTCATAAGTTTCACCAGTACCAGGTCGTTGGGAGGGCTCTCCCAACGGAAGCAGATCAGCACCCAAAGATTTACCGCATGAAACTTTGGGCCACCAACGAGGTTCGGGCAAAATCCAAGTTCTGGTACTTCTTGAGGAAGCTGAAGAAGGTCAAGAAGAGCAATGGTCAAATGCTCGCTATCAATGAGATTTTTGTGAAGAACCCAACCAAGATTAAGAACTATGGGATATGGTTGAGGTATCAAAGTAGAACCGGTTATCACAACATGTATAAGGAGTACCGTGACACCACTCTAAATGGTGCAGTTGAGCAGATGTACAATGAGATGGCATCTCGTCACAGGGTGAGGTCCCCATGTATCCAAATTATTAAGACCGCTACCATCCCGGCTAAGATTTGCAAGAGGGAGAGCACCAAGCAATTCCACAACTCCAAAATCAAGTTTCCATTAGTTTTCAAGAAAATCAGGCCACCATCCAGGAAGCTCAAGACGACATACAAGGCCAAAAAGCCAAACTTGTTTATGTAA 621 0.467 MGETREVERVGSVGIDEKCRVVRCVRYVRWVHKFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFVKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKICKRESTKQFHNSKIKFPLVFKKIRPPSRKLKTTYKAKKPNLFM 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02579 206 PIRSF Ribosomal_L18a 31 206 IPR021138 GO:0003735|GO:0005840|GO:0006412
Vian4g02579 206 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 35 156 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vian4g02579 206 Gene3D - 28 99 - -
Vian4g02579 206 Hamap 50S ribosomal protein L18Ae [rpl18a]. 34 97 IPR028877 -
Vian4g02579 206 Gene3D - 100 175 - -
Vian4g02579 206 FunFam 60S ribosomal protein L18a 100 175 - -
Vian4g02579 206 SUPERFAMILY RplX-like 99 174 - -
Vian4g02579 206 PANTHER 60S RIBOSOMAL PROTEIN L18A 31 205 IPR028877 -
Vian4g02579 206 FunFam 60S ribosomal protein L18a 30 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02579 Vian-Chr4 42231646 42236397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02579 33 206 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.379 7.28e-120 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02579 K02882 - jre:108990266 351.673