Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02575 ATGGCTTCTGATTCCAATTCCGATTCCCCACCACCACCAGATTCATCACCCCCACCCCCACCACCGCCGGACAATTCATCTCCTCCCCCACCGTCACAGGACAATTCACCACCTCCTCCCTCGTCAAGCGATAAGAAATCTCCGCCCCCGCCGTCTAATTCATCTCCATCTCCACCTCCGCCACCACCACCACCACCTCCTCCTCCTGATAAGAAATCAGGTAACCGCGAGTCACCGCCGCCCCCACATTCTGGCCATCATTTTTCTCCTCCTCCACCTTCAAAGAACCGGATGTCTTCACCCAAGTCATCATCTTCAAGCTCGTCAGGAGACAGTGGGAGCCAATCATTGAGCACGCCAATTATAATAGTAATCGCAGCAGCAGCTGTGATTTTTCTCCTTCTCCTTCTCATGGTCATCTTTGCGTGTATAAAAAGAAAAAAGAAATCTCAGTTACCCATTGATTACTACCATAATCAACCTGATGATGGGTTTCACAAAAGCGAGTTTGGGTACAACACCAATAAGGTTGAGCACGTTATGCATATTCCTCCATATCCAGTTCCAGTTGGAGGTTGGTCAGCAACCCAGGGTGTTAGTTCTGACATGAGCACTGCCAGTTACTCTGGGCCCCATGGTCCCGTTTTGCCACCTCCGCACCCCACGGTGGCTCTCGGATTCAACCAAAGCTCCTTCACTTTCGAGGAGCTCTCGGCTGCCACTGCTGGCTTTAGCCAACACAACCTGCTGGGCCAGGGTGGCTTCGGATTCGTCCACAAAGGTGTTCTACCCAATGGCAAGGAAATTGCAGTGAAGAGCCTCAAATCCACTAATGGCCAAGGAGACAGAGAATTCCAAGCTGAGGTTGACATCATCAGCCGCGTCCACCATCGCCATCTCGTCTCTCTCGTCGGCTATTGCATCTCACAATCCAACAAGCTCCTCGTTTATGAGTTTGTGCCTAACAATACCCTCGAATACCACCTTCATCGTCACCCTCGTATCATTCACCGAGACGTAAAGGGTGCAAACATTCTACTTGAAAACAACTTCGAAGCCAAAGTGGCAGATTTTGGGTTGGCAAAGATTAGTCAAGACACTTCCACTCGTGTAATGGGAACATTCGGGTATTTGGCTCCAGAGTATGCATCAACCGGTAAGCTAACTGACAAATCTGATGTGTTCTCGTTCGGTATTATGCTTTTGGAGCTCATAACAGGTCGGGAACCTGTGGACAACACTGGGGAATTTGAAGATAGTTTGGCCGACTGGGCTAGACCACTCTGTACAAAGGCAATGGAGGATGGAAGTTTTGAAGGGCTTGTGGATCCACGTTTAGAGGGTAATTATGACGAGCGCCAAATGTCATGTATGGTGGCTTGTGCTGCATTTAGCGTAAGGTACTCGGCAAAGAAGCGACCGAAAATGAGTCAGATTGTGAGAGTGCTGGAGGGTGATGTGTCAGTAGAAGTGCTTGGTTACGAGGGAGTGAAACCTGGGTTCGGCGGCGAAAGCGGGGAATATAAAGCTGACATGATGAAGTTCAGGAAACTAGCATTAGAAGAGAGTGGCAGTGAACAATCATCTGCTGAATATGGCAATGCCGGCAGGAGGGTAGGAGCCCGAATGCACACTCCTTAA 1641 0.4966 MASDSNSDSPPPPDSSPPPPPPPDNSSPPPPSQDNSPPPPSSSDKKSPPPPSNSSPSPPPPPPPPPPPPDKKSGNRESPPPPHSGHHFSPPPPSKNRMSSPKSSSSSSSGDSGSQSLSTPIIIVIAAAAVIFLLLLLMVIFACIKRKKKSQLPIDYYHNQPDDGFHKSEFGYNTNKVEHVMHIPPYPVPVGGWSATQGVSSDMSTASYSGPHGPVLPPPHPTVALGFNQSSFTFEELSAATAGFSQHNLLGQGGFGFVHKGVLPNGKEIAVKSLKSTNGQGDREFQAEVDIISRVHHRHLVSLVGYCISQSNKLLVYEFVPNNTLEYHLHRHPRIIHRDVKGANILLENNFEAKVADFGLAKISQDTSTRVMGTFGYLAPEYASTGKLTDKSDVFSFGIMLLELITGREPVDNTGEFEDSLADWARPLCTKAMEDGSFEGLVDPRLEGNYDERQMSCMVACAAFSVRYSAKKRPKMSQIVRVLEGDVSVEVLGYEGVKPGFGGESGEYKADMMKFRKLALEESGSEQSSAEYGNAGRRVGARMHTP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02575 546 Pfam Protein kinase domain 328 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02575 546 Gene3D Transferase(Phosphotransferase) domain 1 324 491 - -
Vian4g02575 546 MobiDBLite consensus disorder prediction 10 75 - -
Vian4g02575 546 MobiDBLite consensus disorder prediction 1 116 - -
Vian4g02575 546 Gene3D Phosphorylase Kinase; domain 1 221 319 - -
Vian4g02575 546 ProSitePatterns Protein kinases ATP-binding region signature. 250 272 IPR017441 GO:0005524
Vian4g02575 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Vian4g02575 546 FunFam proline-rich receptor-like protein kinase PERK1 222 319 - -
Vian4g02575 546 Pfam Proline-rich membrane anchor 1 76 147 - -
Vian4g02575 546 SUPERFAMILY Protein kinase-like (PK-like) 230 483 IPR011009 -
Vian4g02575 546 SUPERFAMILY Formin homology 2 domain (FH2 domain) 59 68 - -
Vian4g02575 546 MobiDBLite consensus disorder prediction 83 97 - -
Vian4g02575 546 ProSiteProfiles Protein kinase domain profile. 244 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02575 546 PRINTS Proline rich extensin signature 47 72 - -
Vian4g02575 546 PRINTS Proline rich extensin signature 27 44 - -
Vian4g02575 546 PRINTS Proline rich extensin signature 6 22 - -
Vian4g02575 546 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 331 520 IPR047117 -
Vian4g02575 546 SMART serkin_6 244 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02575 546 MobiDBLite consensus disorder prediction 98 116 - -
Vian4g02575 546 MobiDBLite consensus disorder prediction 522 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02575 Vian-Chr4 42207464 42210024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02575 132 541 Trihelix Transcription Factor Family AT1G70460 47.609 3.16e-121 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vian4g02575 Pkinase 1.8e-23 CL0016