Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02572 ATGGCGGCATCCGCCACCGCCTCCGGCGGTGCGTTGACGGATCTAACTCACCGAACCCCCTTTCTCGGTCTCAAACTCTACGCCCTGATCCTCATTCTAGTTATAATGGTGGTGGCAGCAGTGCTCCTGATCCTCCTCTGCTTCCGCCGGAGCTCGAAGAAGCGGAAAATGCGAGTGAAGCACAGCTCCGGCGCGATCCCGCTGGTATCGAAGGAGATCCTGGAGGTGAATACTCTGGAGCTGAAAATCGAAGAGGTGGACGAGGAGGATCCGAAGAAGGAGGAGATGAAGCTTGAAGATAGTCCGTCGGTGGAGTCACCGAACATAGGGTGGGGACGCTGGTATACCCTCAGTGAGCTTGAGGCTGCGACGCAAGGGTTCGCCGAAGGGAATGTGATCGGAGAAGGAGGGTATGGGATTGTGTATAGAGGAAATTTGCTCGACGGTTCTGTCGTCGCGGTCAAAAATCTTCTCAACAACAAGGGGCAGGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAGGCACAAGAATTTGGTGGGGTTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTGCATGGTGACGTAGGACCTGTTAGCCCCTTGACATGGGATATACGAATGAAGATTGCTGTTGGGACTGCGAAAGGATATGTGTCACCTGAGTATGCAAGCACAGGTATGCTTAATGAAGGCAGCGATGTGTATAGTTTTGGGATTCTACTTATGGAGCTAATTACAGGGAGGAGTCCGATCGATTATTCTAGACCACCTGGAGAGATGAACTTGGTTGATTGGTTTAAAGGAATGGTTGCAAATCGTCTTGGTGATGAACTAGTTGATCCTTTAATAGATATTCAACCCTCTCAAAGATCTTTGAAACGAGCTTTACTTGTTTGTCTGCGCTGTATAGATTTGGATGTCAGTAAGCGACCAAAGATGGGCCAAATTGTTCACATGCTTGAGGCTGACGATTTTCCCTTTCGTTCTGAACATCGAACAAATAGAGAGAAAGATCCTGTTTATTCTAAAGCAGCTGGTTCCAGCAAGATTCCATGTCCAACAAGGCATGTAGAGCCAGTAGATAAATCAAGCTGGAGATGA 1164 0.4802 MAASATASGGALTDLTHRTPFLGLKLYALILILVIMVVAAVLLILLCFRRSSKKRKMRVKHSSGAIPLVSKEILEVNTLELKIEEVDEEDPKKEEMKLEDSPSVESPNIGWGRWYTLSELEAATQGFAEGNVIGEGGYGIVYRGNLLDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYVDNGTLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPPGEMNLVDWFKGMVANRLGDELVDPLIDIQPSQRSLKRALLVCLRCIDLDVSKRPKMGQIVHMLEADDFPFRSEHRTNREKDPVYSKAAGSSKIPCPTRHVEPVDKSSWR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02572 387 Coils Coil 69 89 - -
Vian4g02572 387 MobiDBLite consensus disorder prediction 350 387 - -
Vian4g02572 387 Gene3D Transferase(Phosphotransferase) domain 1 234 362 - -
Vian4g02572 387 FunFam Probable serine/threonine-protein kinase At1g01540 107 202 - -
Vian4g02572 387 ProSitePatterns Protein kinases ATP-binding region signature. 133 155 IPR017441 GO:0005524
Vian4g02572 387 ProSiteProfiles Protein kinase domain profile. 127 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02572 387 Pfam Protein tyrosine and serine/threonine kinase 238 341 IPR001245 GO:0004672|GO:0006468
Vian4g02572 387 Pfam Protein tyrosine and serine/threonine kinase 130 237 IPR001245 GO:0004672|GO:0006468
Vian4g02572 387 Gene3D Phosphorylase Kinase; domain 1 88 202 - -
Vian4g02572 387 PANTHER OS01G0323000 PROTEIN 102 237 - -
Vian4g02572 387 SUPERFAMILY Protein kinase-like (PK-like) 110 345 IPR011009 -
Vian4g02572 387 FunFam Putative receptor-like serine/threonine-protein kinase 235 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02572 Vian-Chr4 42183466 42186493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02572 114 342 Trihelix Transcription Factor Family AT5G38560 35.517 7.07e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vian4g02572 PK_Tyr_Ser-Thr 8.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02572 - - vra:106762137 598.971