Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02569 ATGGCTTCTGCAGAAGTTGAGTTCCGATGCTTTGTCGGTGGGCTTGCTTGGGCCACTGACAACGATGCTCTCGAGAAAGCCTTCTCACCGTATGGCCAGATCCTCGAATCGAAGGTCATCAACGACCGTGAAACTGGAAGATCAAGAGGGTTTGGATTTGTGACCTTCGCCACGGAGCAGGCGATGAGAGACGCTATCGATGGTATGAACGGCCAGAACCTTGACGGCCGTAACATCACCGTCAACGCGGCTCAGTCCCGTGGAAGAGGTGGTGGAGGCGGCGCTGGTTATGGAAGCGGCGGTGGTGGAGGTTACGGTGGGGGTGGCGGTGGAGGAGGATATGGACGAGGTGGTGGTGGTGGAGGTGGTTACGGTGGAGGCGGCCGCCGTGAAGGTGGTTATAACCGTAATGGTGGTGGTGGTGGTTATGGCGGGGGCGGCGGTGGATACGGAGGTGGTGGTTATGGAGGTAGCAGGGACCGTGGATATGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGTGGTGCTTCCGATGGTGGAAGCTGGAGGAATTAG 555 0.5856 MASAEVEFRCFVGGLAWATDNDALEKAFSPYGQILESKVINDRETGRSRGFGFVTFATEQAMRDAIDGMNGQNLDGRNITVNAAQSRGRGGGGGAGYGSGGGGGYGGGGGGGGYGRGGGGGGGYGGGGRREGGYNRNGGGGGYGGGGGGYGGGGYGGSRDRGYGDGGSRYSRGGGASDGGSWRN 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02569 184 Gene3D - 2 106 IPR012677 -
Vian4g02569 184 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Vian4g02569 184 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vian4g02569 184 FunFam Glycine-rich RNA-binding protein GRP1A 2 115 - -
Vian4g02569 184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vian4g02569 184 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 6 164 - -
Vian4g02569 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vian4g02569 184 MobiDBLite consensus disorder prediction 150 184 - -
Vian4g02569 184 CDD RRM2_NsCP33_like 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02569 Vian-Chr4 42138350 42139184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02569 10 96 Eukaryotic Initiation Factors Gene Family AT1G71770 37.778 5.85e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02569 - K13195 gmx:100777821 160.999