Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02566 ATGTTGCACTGTGAGAACACGTCGGGGAATCTGGCTGGGGACATGACAGTGTGGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCATGGGTACTTTTCTGCGTTCGACGCTGTTTTCTCTTCTTCTTCTCAAGATTCCTTCGTGCTGCCTGCTGATTCCGGTTGTGCGCTTGGTGAAGTGGTGGCTCAGGCTCGGGCCCGGCCTGGCTCCATGAATAAGCCATCTGTTCATGGGTTTGATGAAAGTTCTTCGATTTCAAGGACTTTTAGTTGTCCACCTGCTTTGGTGGAGCCCAGGCCCACTGGCTCCTCGATTGAGAAAGAGAGTTCCAAGAAAAGGAAACCCGAGAAGCTTCACAATGCTAAGTTTGTTACAGAAAATGATACGAAAGACAAGAGGATCAAACTGGGTGCCGACGATGAACAATCCAAAATCACAGGGAGCCCCAACAGTAACGCGAACACTGATAGCAACAAAAGAGAAACTTGCGCAGATACTTCAAATTCGAAGCAGAATTCCAAAGCCTCCGAGATTCAAAACCAAAAGCCCGATTACATTCACGTCCGCGCACGTCGCGGCCAAGCCACCGATAGCCATAGCTTGGCTGAAAGAGTTAGAAGGGAAAAGATTAGCGAGAGAATGAAGTACTTGCAAGATTTAGTACCTGGTTGCAACAAAATCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAGGTTGAGTTTCTGTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACCTCAGTATTGATGATCTGTTTGAAAAAGAGGTGTTTCCTTGTGCTGCGAATTTTCCAAACATTGGAATGTCATCGGATTTGACGAACTCAGGCTATGTTCAATTCAATTCACCACAAGAAATGGTTTCGTATGGAGGATTAGACACGCAATTGCTTCCCTCCTCAGCATGGGAAGGTGATTTCCAAAACGTTTTCAATTTGGATTTTGATCAAGTGCGAGCCACATCTTTCCCTTCACATTTGTCTTCAGGACTGGTTGAAGCTGGCAATCATCTAAAGATGGAGATGTAG 1086 0.4586 MLHCENTSGNLAGDMTVWERQRARMKWQEEHGYFSAFDAVFSSSSQDSFVLPADSGCALGEVVAQARARPGSMNKPSVHGFDESSSISRTFSCPPALVEPRPTGSSIEKESSKKRKPEKLHNAKFVTENDTKDKRIKLGADDEQSKITGSPNSNANTDSNKRETCADTSNSKQNSKASEIQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLSIDDLFEKEVFPCAANFPNIGMSSDLTNSGYVQFNSPQEMVSYGGLDTQLLPSSAWEGDFQNVFNLDFDQVRATSFPSHLSSGLVEAGNHLKMEM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02566 361 MobiDBLite consensus disorder prediction 69 186 - -
Vian4g02566 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 246 IPR011598 GO:0046983
Vian4g02566 361 Pfam Helix-loop-helix DNA-binding domain 200 247 IPR011598 GO:0046983
Vian4g02566 361 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 102 291 IPR024097 GO:0006355
Vian4g02566 361 CDD bHLH_AtBPE_like 186 271 - -
Vian4g02566 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 264 IPR036638 GO:0046983
Vian4g02566 361 SMART finulus 202 252 IPR011598 GO:0046983
Vian4g02566 361 Gene3D - 193 267 IPR036638 GO:0046983
Vian4g02566 361 MobiDBLite consensus disorder prediction 106 142 - -
Vian4g02566 361 MobiDBLite consensus disorder prediction 145 182 - -
Vian4g02566 361 MobiDBLite consensus disorder prediction 78 92 - -
Vian4g02566 361 FunFam Basic helix-loop-helix transcription factor 193 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02566 Vian-Chr4 42102194 42104446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02566 14 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 41.693 1.04e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian4g02566 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02566 - - gmx:100819517 462.225