Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02547 ATGGCAACTTACAACCCATGTTCAAGTAATCAAAGGGGTGCCGTGCCTATGCTGTGTCTTAGGGAGCCTTTGCATAATTCGTATCCCGAGACACCAATTTTGCCAAGCAATATGACATTGTTGTATATGAACTCTGGTTCATATTCTGAAGCATTACCTGGAAATTCTCAGCAGCAAAGCAATTGCTTTGTGGTTCCATCACCGTCAGTGGGTGCTTCAAATTCCACAGCTGAGCAGCAAGAAATATTGGCTAATATTGGTGGATACCAAATTGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAGTGAGATGTTAGTCAGACAATCTATAGATGGACATAACTTGCAGGGCCAGGGATTATCTTTAAGCCTTGGAACCCACATGCCCTCCGGAATTCAACTGCCTTCTGTCCATGATAGGAATCATTGCTCAAATCTTGATTCGTTTTTGGGTGCAAATCCATCACTTTCAGCCAACGAGATCTACCAAAATGGCTCCTCTAGACATTCTGAAAATTTTCCTCCTGTGTTACCTGAAGCTAGTCATGATTTGAACAAAGCAGATTTTTCATTTCCTGGAATTTCCAGTGTTGGAAGAACGGTTCCTACCTCCAAATATCTCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGATATCCGACAAGCTATTAAAAGACCTGAAACGAGAAGTCACGGAACACATGAGAACTCTCCGAAGAATTCCAAGGAGGGTGGTGAGCTCCTAGAAAATGAACGGCCTTCTGCAACTGGTGTGCCAAATTCTCAAGTCTCAGCCAGCAACTCTTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCACAAGAAGTTAGCAAAGCTTCGGTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTACCAGAAGATGCAGAACGTGGTGTCATCATTTGATGTGGTAGCAGGATGTGGGGCAGCTAAACCATACACAGCCCTTGCTCTACAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATTCAATCACTGGTCAAATTCGTGCAACACAAAAGAGCCTTGGGGAGCATGATGCTTCTGAAAGTAATAAAGGAGTTGGAATGGCAAGACTAAAGTATGTGGACCATCAAGTGCGACAACAAAGGGCTCTTCAGCAGCTTGGTATGATGCAGCATGCATGGAGACCGCAAAGGGGGCTTCCAGAAAGCTCTGTTTCGATTCTCCGCGCATGGCTTTTTGAGCATTTCCTTCATCCATACCCAAAGGATTCCGAAAAGACCATGCTAGCAAGACAGACAGGCTTAACCCGAAGTCAGGTCTCAAATTGGTTCATAAATGCACGTGTGCGTCTGTGGAAGCCTATGATTGAGGATATGTACAAGCAAGATGTTTCTGATGTGGACATGGACTCAACTTCTTCATCTGAAAATGTCTCCAAGGCAACAAAAAGTGATGTCAAGATCTCCAATGATACGGTTGATGATTCACAGCACTGTCAGAGTCCAATAGTAACCGATACAAATCATGGTGGTGGACAAGCTAAGGACTTTGGATATGATCAAGTTCTTGATACAAAAATCATGGCATCCACTGGATTAGCTAGTCATGAGGTTGAAACAGAACATAGGTCAGGAAAGCAGTCTGGGGAGAAAAGGCCAAATTTGGATAATTGTGGTCTCTTCTCTGATAACATGATTGTTCAATCTGATAGAGCTACTAATGATGACAGGTTTATAGCAGTTGGTTCAACGTGCCAAATGTCAGAGTTTGAGAGCTTCAAGTCAGGAAGTGGAGTGTCTCTAACTTTGGGTTTACAGCATTGTGAAGGAGGTAATTTTTTGCCTGGTGAGACCCATCTCAGTTTGGTTTCCATGAAGGAAAATGGCATCTACCGCAGTGCAGGTGCAGCTTCTACAGTTGGAGTACATACAGCAGAACTTGAGCACGTTGGTGCTGGAAACCAACGACAGAGGTTCAGTTCACCTCATATGTTACATGATTTTGTTGTGTGA 2022 0.4357 MATYNPCSSNQRGAVPMLCLREPLHNSYPETPILPSNMTLLYMNSGSYSEALPGNSQQQSNCFVVPSPSVGASNSTAEQQEILANIGGYQIGVHDFSAWREGRSEMLVRQSIDGHNLQGQGLSLSLGTHMPSGIQLPSVHDRNHCSNLDSFLGANPSLSANEIYQNGSSRHSENFPPVLPEASHDLNKADFSFPGISSVGRTVPTSKYLKAVQQLLDEVVDIRQAIKRPETRSHGTHENSPKNSKEGGELLENERPSATGVPNSQVSASNSSCELSHAEKQDLHKKLAKLRSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDSITGQIRATQKSLGEHDASESNKGVGMARLKYVDHQVRQQRALQQLGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKTMLARQTGLTRSQVSNWFINARVRLWKPMIEDMYKQDVSDVDMDSTSSSENVSKATKSDVKISNDTVDDSQHCQSPIVTDTNHGGGQAKDFGYDQVLDTKIMASTGLASHEVETEHRSGKQSGEKRPNLDNCGLFSDNMIVQSDRATNDDRFIAVGSTCQMSEFESFKSGSGVSLTLGLQHCEGGNFLPGETHLSLVSMKENGIYRSAGAASTVGVHTAELEHVGAGNQRQRFSSPHMLHDFVV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02547 673 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Vian4g02547 673 SMART prehox3 197 348 IPR006563 -
Vian4g02547 673 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Vian4g02547 673 MobiDBLite consensus disorder prediction 536 558 - -
Vian4g02547 673 MobiDBLite consensus disorder prediction 539 553 - -
Vian4g02547 673 SMART HOX_1 397 461 IPR001356 GO:0003677
Vian4g02547 673 MobiDBLite consensus disorder prediction 227 252 - -
Vian4g02547 673 MobiDBLite consensus disorder prediction 257 276 - -
Vian4g02547 673 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 125 481 - -
Vian4g02547 673 Pfam Associated with HOX 203 347 IPR006563 -
Vian4g02547 673 Gene3D - 393 470 - -
Vian4g02547 673 CDD homeodomain 397 458 IPR001356 GO:0003677
Vian4g02547 673 MobiDBLite consensus disorder prediction 470 501 - -
Vian4g02547 673 Coils Coil 280 307 - -
Vian4g02547 673 SUPERFAMILY Homeodomain-like 398 463 IPR009057 -
Vian4g02547 673 MobiDBLite consensus disorder prediction 227 278 - -
Vian4g02547 673 MobiDBLite consensus disorder prediction 470 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02547 Vian-Chr4 41969494 41972404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02547 27 673 Homeobox Transcription Factor Family AT4G34610 38.240 8.53e-123 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian4g02547 POX 7.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02547 - - vra:111240485 1312.36