Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02544 ATGGCTAAGCCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGCTGATTGCGTGCTCATGCGACCGTCGGATCCGGCTAAACCCTCATATGTGGCCAGGATCGAAAGGATCGAGGCGGATGCGCGTGGCGCAAATGTGAAAATTCATGTTCGCTGGTACTACAGGCCAGAGGAGTCAATTGGGGGTCGCCGTCAGTTTCATGGCTCAAAGGAGGTTTTTCTCTCTGATCACTTTGATGTTCAGAGCACCGACACAATCGAAGGCAAGTGTACCGTCCACAGCTTCAAGAGCTACACAAAACTGGATGCGGTTGGTAACGATGATTTCTTCTGTCGGTTTGAGTACAATTCCTCCACAGGTGCCTTCAATCCTGATAGAGTTGCAGTGTATTGTAAATGTGAGATGCCTTACAATCCTGATGACCTAATGGTCCAATGTGAGGGCTGCAGTGACTGGTTCCATCCTGCTTGCATAGACATGACTGTTGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGCTGCTCTGCCGAAGGTCAAAAAAAGTTGCAGAACTCTCATTCCGCTTCTAGACTCTCGGATACAAAGGTGGACACTAAACGCCGTCGTAGGCAATAG 654 0.4817 MAKPKAPRRTLESYSVKHISKTIRAADCVLMRPSDPAKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSTDTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRLSDTKVDTKRRRRQ 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02544 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Vian4g02544 217 MobiDBLite consensus disorder prediction 195 217 - -
Vian4g02544 217 FunFam Bromo-adjacent homology (BAH) domain-containing protein 134 204 - -
Vian4g02544 217 PANTHER OS08G0421900 PROTEIN 5 208 - -
Vian4g02544 217 SMART BAH_4 21 137 IPR001025 GO:0003682
Vian4g02544 217 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Vian4g02544 217 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Vian4g02544 217 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Vian4g02544 217 SMART PHD_3 141 188 IPR001965 -
Vian4g02544 217 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Vian4g02544 217 Pfam PHD-finger 141 189 IPR019787 -
Vian4g02544 217 Pfam BAH domain 22 136 IPR001025 GO:0003682
Vian4g02544 217 Gene3D - 2 135 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02544 Vian-Chr4 41942338 41947392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02544 41 139 Core DNA Replication Machinery Family AT4G14700 31.313 9.95e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian4g02544 BAH 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02544 K25868 - gmx:100787968 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02544 4 41942338 41947392 Vian4g02544 4 41942338 41947392 ECH