Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02542 ATGCAAAGAGGAACAGAAGGAGAAGAAGAAGCAGTGTCAAGGGGTTCTAAGTGCCAAGACTGTGGGAATCAAGCCAAGAAGGAATGTTCATATTCAAGATGCAGAACTTGTTGCAAGAACAAAGGCTTTAATTGCCAAACCCATATCAAGAGTACATGGACTCCTGTTGATAGAAGGCGCACCAAGGATAATAACCCATCTTCATCTCCACACAACTTTCACCCAGATTTTCCTCAAAACCACAACCAGATCAATCCATATTCAGGTTTAGAGATGAAATTTCCTTGTGCTACGAGTTCGATGGCTATGTTTCGGTGCGTTCAGGTTCGGTCGGTGGATGATGCGGTTAACGAAATAGCGTATCAAACATCTGTGAACATTGGGGGGCATGTATTCAGTGGAATACTATATGATCAAGGCCCTGAACAAAACTATAACATTAACAAGGGTGAGAGTTCCACTGCTCTTGTTGATGAACACCAAAATAATAGTCTTGGTCTGGTGAAGAATTCTTCAAGTAGAGATAGCAGTGGTGTAACTATAGCCTCTGCCGGTCACGGTGACCCTCTTTTTCCTCCACCACCGTATCCCTTTCCACTTGCTTCCTTCAGACCCGGTATGCCATATTTCACATACCCAAGATCTTGA 648 0.4352 MQRGTEGEEEAVSRGSKCQDCGNQAKKECSYSRCRTCCKNKGFNCQTHIKSTWTPVDRRRTKDNNPSSSPHNFHPDFPQNHNQINPYSGLEMKFPCATSSMAMFRCVQVRSVDDAVNEIAYQTSVNIGGHVFSGILYDQGPEQNYNINKGESSTALVDEHQNNSLGLVKNSSSRDSSGVTIASAGHGDPLFPPPPYPFPLASFRPGMPYFTYPRS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02542 215 MobiDBLite consensus disorder prediction 66 84 - -
Vian4g02542 215 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 9 171 IPR007818 GO:0003700|GO:0006355
Vian4g02542 215 MobiDBLite consensus disorder prediction 1 15 - -
Vian4g02542 215 MobiDBLite consensus disorder prediction 56 84 - -
Vian4g02542 215 NCBIfam LRP1 C-terminal domain 93 141 IPR006511 -
Vian4g02542 215 MobiDBLite consensus disorder prediction 167 186 - -
Vian4g02542 215 MobiDBLite consensus disorder prediction 1 23 - -
Vian4g02542 215 Pfam Domain of unknown function (DUF702) 15 142 - -
Vian4g02542 215 NCBIfam putative zinc finger domain, LRP1 type 17 59 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02542 Vian-Chr4 41923136 41923862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02542 18 215 C2H2 Transcription Factor Family AT3G51060 39.207 8.23e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vian4g02542 DUF702 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02542 - - pvu:PHAVU_009G004300g 357.836