Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02541 ATGAAGATCCAGTGTGATGTATGTGACAAAATGGAAGCCACAATCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATGGCTGCGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGTTTCCCTCTCATCTTCCCCACCTCCAAAGACTTCCCTCGCTGTGATATCTGCCAAGAGAAGCGTGCGTATCTATTCTGCCAAGAAGACAGGGCATTGTTGTGTAGGGAATGTGACCTTCCAATACACAGAGCGAATGAGCATACTCAGAAACATAACAGGTTTCTTCTAACGGGGGTGAAGCTCTCGGCTACATCTTTGGATTATGCTTCCTCCTCCACCAATTGCACCGATACACTCACTGCCTCTGAAGGAAAAAACGCTCGATCTAGAATGAACACACCCAGATCAATTTCCAATGAAAATCTCAGCTCTTCTTGCAAGGTTGAAGACAACGTGGGCAGTGACACTGGCTCGGTTTCAACCAGCAGCATTTCTGAGTATTTGATCGAGACAATACCCGGTTACTGTTTCGAAGAACTCCTTGATGGTTCATTCGCACCTAATAATGGTTTCTAA 588 0.466 MKIQCDVCDKMEATIFCPADEAALCHGCDRTIHHANKLATKHPRFPLIFPTSKDFPRCDICQEKRAYLFCQEDRALLCRECDLPIHRANEHTQKHNRFLLTGVKLSATSLDYASSSTNCTDTLTASEGKNARSRMNTPRSISNENLSSSCKVEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFAPNNGF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02541 195 FunFam B-box zinc finger protein 21 1 98 - -
Vian4g02541 195 Gene3D Classic Zinc Finger 1 100 - -
Vian4g02541 195 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vian4g02541 195 CDD Bbox1_BBX-like 5 47 - -
Vian4g02541 195 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vian4g02541 195 SUPERFAMILY B-box zinc-binding domain 51 92 - -
Vian4g02541 195 CDD Bbox1_BBX-like 58 100 - -
Vian4g02541 195 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Vian4g02541 195 MobiDBLite consensus disorder prediction 124 163 - -
Vian4g02541 195 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 186 - -
Vian4g02541 195 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vian4g02541 195 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02541 Vian-Chr4 41912528 41913337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02541 1 195 C2C2-CO-like Transcription Factor Family AT1G75540 50.244 4.88e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vian4g02541 zf-B_box 8.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02541 - - gmx:100800981 314.694