Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02538 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGCGGGAGTTCATCGTCCAGCAAACGCACTGCGAGGATTTTTTTTCCCTCAACGCCAACACCGTTGCCGGAGGCGACGATTTCTCCGTCGACGACCTATTTGACTTTTCAGACGGCTCTCTTCACTACGAACCACAAGAATACGTGGAAGAAAAAAAAAGTTTATCGGCCTCGTCGCAGTCAAAGGACCGTGGAGAAGACGATAGCAACTCTAATTCCACCGGAGTTTCCTACGATTCAATTTTCTCCGCCGAACTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGACGATTCTCTCCCGGAGCTGTCTCTTTTATACCCGGTTCGTCCGGAGGAAGTGAACCGGCGGGTCGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTGTGAAACGAAGATAACAACCAAGACAAGAACTGTACGGAATAGAAAACCAAACGCTCGCGTGTGGTCGTTGGGCCCGTTGCTCTCCCTCCCGTCCTCGCCGTCTTCGTGCTCGTCTTCCTCGACGGAGCCGCCCGCGAAGAAACAGAAAAAGCGGGCCGAGGCCCAGCCCGTTGGGGCCCAGGTTCAGCGGCGGTGCAGTCACTGTCAAGTGCAGAAGACACCGCAGTGGAGGACGGGCCCACTGGGCGCAAAAACCCTCTGCAACGCGTGCGGGGTCCGGTACAAATCGGGTCGGCTTTTTTCGGAGTACAGGCCGGCCTGTAGCCCAACCTTCTGCAGCGATATTCACTCCAACAGCCACCGGAAAGTGTTGGAGATTCGCAAGAAGAAAGGGGTTTCTGGGCCGGAGGCCCATCCCCAGGCCCAAATGGTTCCCACCTGCTGA 900 0.5578 MEVAVAKALKPSLRREFIVQQTHCEDFFSLNANTVAGGDDFSVDDLFDFSDGSLHYEPQEYVEEKKSLSASSQSKDRGEDDSNSNSTGVSYDSIFSAELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRPEEVNRRVEPEPSAKKTPRFPCETKITTKTRTVRNRKPNARVWSLGPLLSLPSSPSSCSSSSTEPPAKKQKKRAEAQPVGAQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKGVSGPEAHPQAQMVPTC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02538 299 MobiDBLite consensus disorder prediction 174 210 - -
Vian4g02538 299 Gene3D - 210 261 IPR013088 GO:0006355|GO:0008270
Vian4g02538 299 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Vian4g02538 299 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Vian4g02538 299 FunFam GATA transcription factor 208 293 - -
Vian4g02538 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 272 - -
Vian4g02538 299 PIRSF Txn_fac_GATA_plant 16 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vian4g02538 299 MobiDBLite consensus disorder prediction 60 89 - -
Vian4g02538 299 MobiDBLite consensus disorder prediction 60 82 - -
Vian4g02538 299 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Vian4g02538 299 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Vian4g02538 299 PANTHER GATA TRANSCRIPTION FACTOR 29 295 - -
Vian4g02538 299 MobiDBLite consensus disorder prediction 179 195 - -
Vian4g02538 299 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02538 Vian-Chr4 41876655 41877654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02538 40 282 C2C2-Gata Transcription Factor Family AT4G36240 43.701 2.64e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian4g02538 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02538 - - gmx:100780311 459.914