Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02533 ATGAAGGATAGTTTTGTCTTTGGGAAACACACGACACAGAACCACTTCGCTTTGCATTCGCACCTTCTCCATCCCATTCTCATTCTCTTTCCGTTACCTTCTTCTATATACCCTCTCCACGCGCACACAGACCCTAAATCTCTTCATTTTCTCAATTTTATTTATTTTACTCATAAATTAAACATTCAAATTGCTGTTCCTGGAATCCCTATTCTGTTATCCATGGACGCCGAAGATGACGAAGCTTCACTCCAACCACACTCTGATGCACAATGCCACACCGACATGCAGAATATCCCCTACGCTGCCGCGGAAGTCCCCGAGCCCGATACCGTAGGGGAGCTGAGCGCAGCCGCCGCCGTCCATGAGGTCGCCGCTGTTGAACCCGATGCGACGATGGAGGCGGCGGTTGAGTCCGACGAGGGCGTCGGAGCGCAAGTGATGGACGAGGTAATTGAGGAGAAGGGGGATGAGGTCACCGATGTGGATGACGTGGCGTTGGAGATGGAGAACGTCGAAGAGGAAGGGAATTTGGCAATTGATGCGGAAGAGGACGAAATTGGGGACGAAGACGCGAACGAAGACGCTTTGATGGAAGAAGAAGATGACGAACAGCAACAAGGGGAGGAGGAGGAGGAGGGGGAGGAGGAAGAAAAACAGCAACAAGGAGTGGAGGAGGAAGAAGAGGAACAGCAACAGGGTGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAACATCAACAAGGAGAAGAAGCAGAAGAAGATGCTGATGCTGGAATGGCAAAAACAGACGATACAGAGGAGAAGGAGGAGAAGAGTGTGAGTGGTGGGAAGAGGAAGCGTGGAGCTGGGAAGAATGCTAAGACTACAGGGAGAGTTGCGTCCAGGAAAAAGACGGAAGAGGATGTTTGTTTCATTTGCTTTGATGGAGGTGACCTTGTGCTTTGTGACCGCAGGGGATGTCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCATTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCAAACTATATGTGCTATACATGTACTTTTTCTCTGTGCAAGGGATGCATCAAAGATGCTGTTATTTTATGTGTCAGGGGAAACAAGGGATTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGTGCAGGGAAGCAATGTGGGACAAGTAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAACTATCTCTAACATTTGATGAAATCTCTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAGGAGGAATCACCTGATGAACTTTTTGATGCCACTAATGATAGAGGATCAGATTCTGATAGCTCCTATGAAAATGATTCCAATCGCCCTAAAAGAAGAAAGGCAAAGAAACGGGGTAAGCCCCGTTCCAAAGAAGGAAATTCGAATGGTGCAGTGACAGTGTCTGGTGCTGATGGGCCATCCGGAGATGACAGCTCTGAGTGGGCTTCAAAAGAGCTTCTGGAGTTTGTTATACACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCAGGCTCTTTTGCTTGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATATGTGATGCGAGACTTCAAAATCTTTTTGGTAAACCAAGAGTGGGACATTTCGAGATGTTAAAGCTTCTTGAGTCCCATTTCCTTCTAAAAGAGGATTCTCAGGCCGAAGATCTGCAGGGAAGTGTTGTTGACACCGAAGTTAGTCATTTGGAAGGAGATGGGAATCCCAATTCATATACGAAAGCTGGCAAAGATAAGAAGCGGAAAAATCGCAAAAAGGGTGATGACAGAGGACTTCAAACTAATGTTGATGATTATGCAGCTATTGATAACCATAATATTAATTTAATTTATCTACGACGAAATTTGGTTGAAGATCTCCTTGAAGATACAGAGAAGTTTCATGATAAAGTTGTTGGTGCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTATATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATACGTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCTATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAACGTCTCCGCCAAAGCATTAAGTGTGGTCTCATAAATCGGCTAACTGTGGGTGACATACAGGACAAGGCACTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTGAGTCATCTCCGCGATAGAGCCAGTGAGAAAGGACGCCGGAAAGAATATCCTTTTCTTTTATCTAATATTCAAATACAGAAACTGCAGCTTTTGAAGACACCTGAAGAACGTCAACGTAGGTTGGAGGAAATTCCAGAGATACACGTGGATCCGAACATGGATCCCAGTTATGAATCTGAAGAAGACGAAGATGAAATGGACGATAAAAGACGAGAAAACTACATGAGACCTAGAGGGTCTACTTCCTTTGGAAGGAGGGGGAGAGATATTGCTTCTCCTAGAAGTGTTTCTATTTCAAATGAATCTTGGAGTGGAACAAGGAATTATTCAAATACGAATCAGGAACTTGGCAGAAATTTGTCCAATAAGGGTTTTTCAATCAAAGGTGAAAATGCTTCTAATGTTAATGAGGTACTGAATGATACTCATTTGCTCCAGGGAAGAGATAGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAACTCTCTTCAAGCTTGGAAAGTGGTGCCAAAAGTACCCAATCATTGGTAACATCTGATTCTTTCTCCACTGCTGTATTGGAAGCTTCTGCAGCACCATCTTCCGCTGGAATAACTCCTTCAACTTTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCTTCCGGAAAAATTCAGGGACCATTTTCTATGGTGCAGTTACGCAAATGGAGCAACACAGGATACTTTCCCGCTGATTTGAGGGTTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCGTGACTGATGCCTTGGCAGGGAATTTTTCTAAAGAACCATCGATGGTGGATAAGGCTCAAAAGGTGCATGATTTACATTACCCAGCCTCGTACTCTAGGAAGTCTGCTCAGGGTATGGAAGGTCAAGCTGGAGAAAGACCAACATTTGATCAAAATAGTGGATCTTTGAATTCACATAGTACTCTGGGTTCTCCGGCACAAACCACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCAAGTAGACCCTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAACGGCTGGGGTTCTGATGCTGGTAGTAGAAATGAAACAACAAATCTTCCTTCACCTACACCTCAGACTACCCCTGGTGTGTCTAAGGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCGTAGGAAATTCATTCCCAAGCAATCATGGAGGTTTGCAGGCCTCTTTGGTAGTGCACCCAGAGCATGCTGTGCAAAATCCTGAAAAAGGCTCTTCACAACCCGGTATTAGTTCAGTGTCTTCAGATAATTCTAGGTTACATCCTCAACCAGCACCGGTGGCACCTGTTCTGCATTCAGGGCTTGACCTCAAAATGGCAGGTACAAATATGCAAAACCAGGTTGTGCTTAGCCACAACTCTCATGCAGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTCCAAGGCCAGAACTGCAGGCTTGGGGAGGTGTATCATCCCAACCAAATTCTGCTACTATGCCTGCCCAGCCAGCATCCCATGGCCCCTGGGTTGATGCTTCATCTGTGCAGAACACTGCCTCTTTTAACACTGGAAATCCATCTGCAGGTTTACCCACACCTGGGTTTCTGGGCATGAATACACCCGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGCCAAACATCACAGGTCCTTCTCCAGCTCCACCCAATATGCCTTGGGGAATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGCGTTGTACCTGCTGCCAATATGAACGCAAACTGGATTCCTACGCAGGGGCCAGCACCAGGAAATTCAAATCCAGGATGGGCTGCCCCTAGTCAGGGTCTACCTCCAGTGAATGCAGTTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGTGAATGCAGGATGGGTTGGGCCTGGTCAGGGTGTACCACCTGGAAATGCCAACCCTGTTTGGGTTCCACCGGCAGGGAATCCAGGCGTGTGGGGAAGTGAGCAAAGTCATAATGGAGACCGGTTCCCCAACCAAGGGGATCGAGGTAGCCAAAGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAACAGGCAATCATCATTTGGCAGAGGAGCTCCTTCCAGGCCTCCTTTTGGGGGACAACGAGGAGTTTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGGATTCTTGTGATTTTCTACACAATTAG 4677 0.4561 MKDSFVFGKHTTQNHFALHSHLLHPILILFPLPSSIYPLHAHTDPKSLHFLNFIYFTHKLNIQIAVPGIPILLSMDAEDDEASLQPHSDAQCHTDMQNIPYAAAEVPEPDTVGELSAAAAVHEVAAVEPDATMEAAVESDEGVGAQVMDEVIEEKGDEVTDVDDVALEMENVEEEGNLAIDAEEDEIGDEDANEDALMEEEDDEQQQGEEEEEGEEEEKQQQGVEEEEEEQQQGEEEEEEEEEEEHQQGEEAEEDADAGMAKTDDTEEKEEKSVSGGKRKRGAGKNAKTTGRVASRKKTEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNANYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNVQGSNVGQVDFDDKNSWEYLFKDYYIDLKEKLSLTFDEISQAKNPWKGSDMLHSKEESPDELFDATNDRGSDSDSSYENDSNRPKRRKAKKRGKPRSKEGNSNGAVTVSGADGPSGDDSSEWASKELLEFVIHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSHLEGDGNPNSYTKAGKDKKRKNRKKGDDRGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGAFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKEYPFLLSNIQIQKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRRENYMRPRGSTSFGRRGRDIASPRSVSISNESWSGTRNYSNTNQELGRNLSNKGFSIKGENASNVNEVLNDTHLLQGRDRESQLSNSWERQKLSSSLESGAKSTQSLVTSDSFSTAVLEASAAPSSAGITPSTLKINETEKMWHYQDPSGKIQGPFSMVQLRKWSNTGYFPADLRVWRTTEKQDDSILVTDALAGNFSKEPSMVDKAQKVHDLHYPASYSRKSAQGMEGQAGERPTFDQNSGSLNSHSTLGSPAQTTGGSWRSKDNMNSLASRPSPLAVEVPKNPANGWGSDAGSRNETTNLPSPTPQTTPGVSKGQAFENKWSPTPVQLPGSLVGNSFPSNHGGLQASLVVHPEHAVQNPEKGSSQPGISSVSSDNSRLHPQPAPVAPVLHSGLDLKMAGTNMQNQVVLSHNSHAEAQGWGSAGVPRPELQAWGGVSSQPNSATMPAQPASHGPWVDASSVQNTASFNTGNPSAGLPTPGFLGMNTPEPWRPPASSSQPNITGPSPAPPNMPWGMGMPGNQNMNWGGVVPAANMNANWIPTQGPAPGNSNPGWAAPSQGLPPVNAVGWVGPGQGRSHVNVNAGWVGPGQGVPPGNANPVWVPPAGNPGVWGSEQSHNGDRFPNQGDRGSQSRDSGYGGKSWNNRQSSFGRGAPSRPPFGGQRGVCKYHESGHCRKGDSCDFLHN 1558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02533 1558 CDD SWIB-MDM2_like 523 598 - -
Vian4g02533 1558 SUPERFAMILY FYVE/PHD zinc finger 299 354 IPR011011 -
Vian4g02533 1558 ProSiteProfiles Plus3 domain profile. 659 792 IPR004343 GO:0003677
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1163 1195 - -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 617 650 - -
Vian4g02533 1558 PANTHER UNCHARACTERIZED 193 1557 - -
Vian4g02533 1558 Pfam GYF domain 1016 1056 IPR003169 GO:0005515
Vian4g02533 1558 MobiDBLite consensus disorder prediction 171 293 - -
Vian4g02533 1558 Gene3D - 1014 1073 IPR035445 -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 262 278 - -
Vian4g02533 1558 FunFam Zinc finger CCCH domain-containing protein 19 293 393 - -
Vian4g02533 1558 ProSiteProfiles SWIB/MDM2 domain profile. 517 600 IPR003121 -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1484 1524 - -
Vian4g02533 1558 FunFam Zinc finger CCCH domain-containing protein 19 510 605 - -
Vian4g02533 1558 Gene3D SWIB/MDM2 domain 514 608 IPR036885 -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1094 1195 - -
Vian4g02533 1558 SMART gyf_5 1014 1069 IPR003169 GO:0005515
Vian4g02533 1558 MobiDBLite consensus disorder prediction 845 920 - -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1460 1534 - -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1309 1329 - -
Vian4g02533 1558 FunFam Zinc finger CCCH domain-containing protein 19 1015 1072 - -
Vian4g02533 1558 CDD Bbox1 349 375 - -
Vian4g02533 1558 SMART rtf1 659 769 IPR004343 GO:0003677
Vian4g02533 1558 CDD PHD5_NSD 303 348 - -
Vian4g02533 1558 ProSitePatterns Zinc finger PHD-type signature. 304 364 IPR019786 -
Vian4g02533 1558 SUPERFAMILY CCCH zinc finger 1536 1558 IPR036855 GO:0046872
Vian4g02533 1558 MobiDBLite consensus disorder prediction 171 261 - -
Vian4g02533 1558 Coils Coil 198 255 - -
Vian4g02533 1558 Gene3D - 661 789 IPR036128 GO:0003677
Vian4g02533 1558 Pfam Plus-3 domain 664 767 IPR004343 GO:0003677
Vian4g02533 1558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 395 IPR013083 -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1413 1429 - -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 450 485 - -
Vian4g02533 1558 ProSiteProfiles Zinc finger C3H1-type profile. 1533 1558 IPR000571 GO:0046872
Vian4g02533 1558 ProSiteProfiles Zinc finger PHD-type profile. 301 367 IPR019787 -
Vian4g02533 1558 ProSiteProfiles GYF domain profile. 1013 1067 IPR003169 GO:0005515
Vian4g02533 1558 SMART PHD_3 303 349 IPR001965 -
Vian4g02533 1558 FunFam Zinc finger CCCH domain-containing protein 19 660 789 - -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1233 1254 - -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1413 1432 - -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 447 520 - -
Vian4g02533 1558 SMART swib_2 525 603 IPR019835 -
Vian4g02533 1558 Pfam SWIB/MDM2 domain 525 598 IPR003121 -
Vian4g02533 1558 SUPERFAMILY Plus3-like 660 788 IPR036128 GO:0003677
Vian4g02533 1558 CDD GYF 1013 1068 IPR003169 GO:0005515
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1231 1258 - -
Vian4g02533 1558 SUPERFAMILY SWIB/MDM2 domain 522 599 IPR036885 -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 896 920 - -
Vian4g02533 1558 SUPERFAMILY GYF domain 1005 1066 IPR035445 -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1362 1384 - -
Vian4g02533 1558 MobiDBLite consensus disorder prediction 1107 1146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02533 Vian-Chr4 41833370 41846372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02533 301 374 PHD Transcription Factor Family AT4G14920 39.189 1.02e-06 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian4g02533 Plus-3 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02533 - - gmx:100815079 2238.38