Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02522 ATGGACGAGGAGGAACGTGGCGTAGGAATTTCTGTCCCGAGGGTTGTCGCCGCCAACCAAACCCCAGAGCAACTCGTCTCCAGGGCCATAGCCCCCGTCAAGAAGGAATTCCTCCGGCCCCCTCCGGTTCGGTCTTCCGCTCCAGACGACGACGTTTCCATTCCCAACGAAAACAAGACCTCTGTTCTGGCCAAGGAGAAGAAGTCTAAGCGCCAACTCAAACGCGAACGTCGTCAGGTTCAAAAGTCGGCAAAAAACCTATGTCCACAAATTGCGAAGACGGGGGATGTTAGTTCGTGTCCGTATAAAGACAAATGTCGTTTCAGCCATGATTTGGAAGGCTTCAAGGCGCAGAAACCGTCTGATCTAGATGGACAATGCCCGTTCGTTAAATCTGGAGTTTCTTGCCCTTATGGCTTAACGTGTAGATTTTCGAGTACGCATGAAGGTGGTGTGCCTTCTTGCGTTCGAAATGGTCCGAAGAATAGTTCCGAGGTGAATGGATTGAGCAAGGAGGTTCAAAAGCTTTTGTGGAAAAATAAGATGACCTTCTCGAAGGCAGATGCCAAACTCAAAAGTCTCGGTCTCCTGGGATCGTCTAAGTCAATAAGGAATGACTTGGAAAATAAAGAGGGAGTTGACACTGGTTCAAATAAGTGTGATCATTCTGATGACAGTGGCTCTTGTGTTGTTACGTCTGACTCAGGTTCTAAGTTGGACTGCCCTGCTGAACGAAGAAAAACTGAAGAAAATTGTGGTCCTGAAGAGGCACAAAATGAAGAGAATTGTGGTCCTAAGGAGTCAAAAAATGAAGGTGTTACTGAGAAAATTGTTGAAAGGAGATGCACGAAATCTGAAGCTGATGCTATAGTCCCGGAAACTGATCTAAGCCTGAAGCCTCACTCGCGTGAGAAGAAGCTTATTGATTTCAGGGGGAAGTTGTATCTTGCACCCTTAACTACTGTTGGCAATCTCCCTTTCCGGAGAGTTTGCAAAGAATTAGGTGCTGATGTGACTTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTAAGACGACATTCATCTGAAGATTTTTTTGGTGTACAAATCTGTGGGGCATATCCAGATACTGTGGCACGAACAGTTGAACTAATAGAGCAAGAATGTACTGTAGATTTTATTGACATAAATATGGGTTGCCCTATTGACATAGTTGTGAATAAGGGTGCTGGATCAGCTCTTTTAACAAAACCAACGCGGATGAAAAGTATCGTAGAAGTAGCTTCGGGTACAGTGGATAAACCAATAACTATCAAGGTAAGGACTGCTTATTTTGAAGGGAAGAACCGCATTGATTCTCTGATAGCAGACATTGGCTCTTGGGGAGCCAGCGCGGTGACAATACATGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGACTATGTATACCAGTGTGCCAGGAAAGCCCCTACTACATTGCCAGTAGTGGGAAATGGAGATGTGTTTTCATTTGTAGACTGGAACAACCACAGAACTGAATGCCGTGAACTTGCTACGGACATGATTGCTCGTGGTGCACTTGTTAAACCTTGGATATTTACAGAGATCAAGGAACAAAGACATTGGGACATCAGTTCTGGGGAGCGACTAAATATTCTCAAGGATTTTGTGAATTTTGGTCTGGAACATTGGGGTTCTGACACAAAAGGGGTTGAGACAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGCAGGTATATACCCGTTGGTCTTTTGGATGTAGTTCCACAACGGTTAAACTGGCGTCCACCTTCTTACTATGGGCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCTGCTGATTGGATACGAATATCAGAGATGCTACTCGGCAAGGTTCCTGATGGCTTTACATTTGCACCAAAGCATAAATCAAACTCATACGATAGAGCTGAAAATGGTTAA 1998 0.4525 MDEEERGVGISVPRVVAANQTPEQLVSRAIAPVKKEFLRPPPVRSSAPDDDVSIPNENKTSVLAKEKKSKRQLKRERRQVQKSAKNLCPQIAKTGDVSSCPYKDKCRFSHDLEGFKAQKPSDLDGQCPFVKSGVSCPYGLTCRFSSTHEGGVPSCVRNGPKNSSEVNGLSKEVQKLLWKNKMTFSKADAKLKSLGLLGSSKSIRNDLENKEGVDTGSNKCDHSDDSGSCVVTSDSGSKLDCPAERRKTEENCGPEEAQNEENCGPKESKNEGVTEKIVERRCTKSEADAIVPETDLSLKPHSREKKLIDFRGKLYLAPLTTVGNLPFRRVCKELGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDFFGVQICGAYPDTVARTVELIEQECTVDFIDINMGCPIDIVVNKGAGSALLTKPTRMKSIVEVASGTVDKPITIKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECRELATDMIARGALVKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRLNWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNSYDRAENG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02522 665 Coils Coil 56 83 - -
Vian4g02522 665 MobiDBLite consensus disorder prediction 208 270 - -
Vian4g02522 665 Gene3D - 77 159 - -
Vian4g02522 665 CDD DUS_like_FMN 313 548 IPR035587 -
Vian4g02522 665 ProSitePatterns Uncharacterized protein family UPF0034 signature. 397 415 IPR018517 GO:0008033|GO:0017150|GO:0050660
Vian4g02522 665 SUPERFAMILY FMN-linked oxidoreductases 313 626 - -
Vian4g02522 665 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 78 156 - -
Vian4g02522 665 ProSiteProfiles Zinc finger C3H1-type profile. 82 113 IPR000571 GO:0046872
Vian4g02522 665 Pfam Dihydrouridine synthase (Dus) 316 550 IPR035587 -
Vian4g02522 665 Gene3D Aldolase class I 309 551 IPR013785 -
Vian4g02522 665 MobiDBLite consensus disorder prediction 31 86 - -
Vian4g02522 665 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 659 - -
Vian4g02522 665 MobiDBLite consensus disorder prediction 239 270 - -
Vian4g02522 665 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 309 551 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian4g02522 Dus 1.1e-50 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02522 K05544 - gmx:100783494 1137.87