Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02517 ATGAAGAAACGCAATCTCCAAAGCTCCAAGGTCCAATCGCCAAACCCCGTTCAGTTCAGCTCCAAGACGCCGGAGAAACTGTCGCAACGGAACCGCACCTGCGGCGTCGCGCTCTCCGTCGCAGATATAAAAGAAGTAGGCAAGGGTTTGCAGAATCGGAAGCGACGTTGTGAAACGACGTCGTCACCGCCGCCAAGCAAGAGTGTGAGGAGGCAGATCTTACAGTGGTCTTCTCCGAGTAAATCCAAGAGTACTAACGATGATCCCTACAAGCTTCCCGAAAAATACGAAATTTTGGATCAGTTCTTCGATCTCTTGGACACTTTAATTTCAATGTTTCGTCTGAAAGGGAAGACGCCGTCTTTTATGGAAATCAGTCACAGAATTGAATCTTTAACAGACAGGAGGTTTACTCACGGCCATCTAGCGCAGTTGAAATTTATATTGCCTGATGCTATTGTTCTGAAGAAGTTTCTAGTGCATGATGAACGGACCAGTTGTATGAAGCAGGATATTCACATTTCTTTAGCTCCTGAGGCGGTAGAGTCTGATGTGAAGATGCCTCCTCAACGTGGGAGAGTGTCATTGAAGAAGTTGTTTCACGCACGGCTTAGAGAATTTTGGGAATCTCATCCTGAGGGTGATGAAATTCCAGAAGGAACTTTACCGGAGCCATTCAATCGCCCAAAGAAAGTCAATATTTTAGACACGTCGGAAACTCGTCTCCCAACAAAATTATCACTCTGCATGCGCTATAATGACATTGTCAATAATGTAGAGTCTGCTAGCATAGATGAAAATATGTCTGCACCTGTAGAGACATCAATTGAATTGCCTAATGAGCGTCTGGCAGCAGCTTCTCACATTGCTCCATTCTTTAGAGCAAGATTTTCTTTGAAACTTCAACAAAATTTAGCAGATACTGTACAGCAAATTTCTCAAGTATATTCAGTACAACCCTCCCCAGCTGAGTGGGCTTCACAAGCAGCTAGCAGTGAAAATTATTCAACAATATGTGCCTCTCTGAAATCATCCAGTGCTCCAGCTCCCACTTCTACTCCAAGCAAAACCGTCGACTACACAGAAAACGAAGATGCTTCTTCTCTCGAGAGGATTGATGCCATGTCAACTCCCGCTAAACTTGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGTTCACCCAAAAGATATCTTATGAGTCCTGATGACCACCCAACCAGTTCTTTGAACAAGTTAGCTAGGCGGCCAACTCGCTCAAGATCATTGAGATTTGACAGCCCAGTGAAGAATGAGGAGGTTGTGAATGAAGACAATGCCGGTGGATTACCAATAGATGATGTTTTTGACATCCTCCCAGGAAAATTTGTCCAATCGGTATGCCTTTTCTTTTAA 1404 0.4437 MKKRNLQSSKVQSPNPVQFSSKTPEKLSQRNRTCGVALSVADIKEVGKGLQNRKRRCETTSSPPPSKSVRRQILQWSSPSKSKSTNDDPYKLPEKYEILDQFFDLLDTLISMFRLKGKTPSFMEISHRIESLTDRRFTHGHLAQLKFILPDAIVLKKFLVHDERTSCMKQDIHISLAPEAVESDVKMPPQRGRVSLKKLFHARLREFWESHPEGDEIPEGTLPEPFNRPKKVNILDTSETRLPTKLSLCMRYNDIVNNVESASIDENMSAPVETSIELPNERLAAASHIAPFFRARFSLKLQQNLADTVQQISQVYSVQPSPAEWASQAASSENYSTICASLKSSSAPAPTSTPSKTVDYTENEDASSLERIDAMSTPAKLVSTPIRLMSATPALRSPKRYLMSPDDHPTSSLNKLARRPTRSRSLRFDSPVKNEEVVNEDNAGGLPIDDVFDILPGKFVQSVCLFF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02517 467 MobiDBLite consensus disorder prediction 7 32 - -
Vian4g02517 467 MobiDBLite consensus disorder prediction 343 363 - -
Vian4g02517 467 SMART CDT1_2 92 224 IPR014939 -
Vian4g02517 467 MobiDBLite consensus disorder prediction 343 362 - -
Vian4g02517 467 Pfam DNA replication factor CDT1 like 92 184 IPR014939 -
Vian4g02517 467 SUPERFAMILY "Winged helix" DNA-binding domain 86 226 IPR036390 -
Vian4g02517 467 MobiDBLite consensus disorder prediction 1 32 - -
Vian4g02517 467 CDD Cdt1_m 77 231 IPR014939 -
Vian4g02517 467 PANTHER DNA REPLICATION FACTOR CDT1 8 463 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vian4g02517 467 MobiDBLite consensus disorder prediction 48 90 - -
Vian4g02517 467 MobiDBLite consensus disorder prediction 397 426 - -
Vian4g02517 467 MobiDBLite consensus disorder prediction 56 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02517 Vian-Chr4 41692547 41694816 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02517 9 463 Core DNA Replication Machinery Family AT2G31270 33.615 5.24e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02517 K10727 - gmx:100778818 543.117