Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02503 ATGGATCCGATCTTAACTGTAGTGATCACTTTTAATCTCTCTCAATTCAATTGCAACGCAACAATGCCCAATCCTAAGGTCTTCTTCGACATGACCATCGGAGGCCAACCTGCCGGCCGCATAGTCATGGAGCTCTTCGCGGACACCACTCCCCGAACCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTAGGCCGCAGCGGCAAGCCCCTCCACTACAAGGGATCCGCCTTCCACCGCGTCATCCCCAACTTCATGTGCCAGGGCGGAGACTTCACCGCCGGGAACGGCACCGGTGGTGAGTCCATTTACGGCTCGAAGTTTGCGGACGAAAACTTCATCAAGAAGCACACAGGTCCAGGCATTCTATCGATGGCGAACGCGGGACCGGGTACGAATGGATCTCAGTTCTTCATCTGCACCGTTAAGACGGAGTGGCTGGACGGGAAGCACGTGGTGTTCGGGGAGGTGGTGGAGGGCCTTGACGTGGTGAAGGACATCGAGAAGGTGGGATCCAGCTCCGGCAAGACCGCCAAACCCCTCCTCAGAATTATTATAGACCGAACAGAACTTGGATCGGAACTGATTTACGTGGGAACTGTTGAGCGAAACCTGGGTGTAAGACGTGGTTAG 642 0.5607 MDPILTVVITFNLSQFNCNATMPNPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSAFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFFICTVKTEWLDGKHVVFGEVVEGLDVVKDIEKVGSSSGKTAKPLLRIIIDRTELGSELIYVGTVERNLGVRRG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02503 213 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 60 IPR002130 GO:0000413|GO:0003755
Vian4g02503 213 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 93 IPR002130 GO:0000413|GO:0003755
Vian4g02503 213 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 139 IPR002130 GO:0000413|GO:0003755
Vian4g02503 213 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Vian4g02503 213 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 152 167 IPR002130 GO:0000413|GO:0003755
Vian4g02503 213 SUPERFAMILY Cyclophilin-like 17 190 IPR029000 -
Vian4g02503 213 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 28 189 IPR002130 GO:0000413|GO:0003755
Vian4g02503 213 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 28 194 IPR002130 GO:0000413|GO:0003755
Vian4g02503 213 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 26 188 - -
Vian4g02503 213 FunFam Peptidyl-prolyl cis-trans isomerase 20 194 - -
Vian4g02503 213 CDD cyclophilin_ABH_like 25 183 - -
Vian4g02503 213 Gene3D - 13 196 IPR029000 -
Vian4g02503 213 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 76 93 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02503 Vian-Chr4 41615556 41618162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02503 39 189 U-box Gene Family AT5G67530 47.368 7.47e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02503 K01802 - gmx:100527355 329.717