Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02501 ATGATCTCTGTTTCTGATCTTGATTTCCGTATCAAGAAGATCTTTCTTCTCAAAACTCTTCAAAACGACTTCTCTTCTCATTCCATCACCGAAACCCTTCTCAAAACCCTCGAGCTCCTTGAGGAAGTCTTTCGCTGCGATGCCTCTCCGGTCACTGCCACCATGAGTGCCGCCTACTGCGCCGTGGCGGTGGAATGCACAATCAAGTATCTGCAAGTGAATCTTTACAACCACAATGCCCCCTACCTCCGAGCGGTGAACAGGATATGGCAACTTAGGATTCCGCAGATGATCGGTTCCGGTTCCAGAGAGGGGAGCCTTCTGTTCTCAGTGGAGTTGGAGCAGTGGAGAAAGGACATTGAAACTTCAGTTTTGGATTTACAAGTGAGGGAGCGGTTGGCCTCCATAGATACTAGAAGGGATGCCATCATAAAGCTCAGGGCCTTTTTGGAGGAAGCCTGGACCGTTATGGACTCTTCTTTTGGTCCGTTAGCAGCTACTGAACACAAACGAAACCAAGAAGGAGAAGTTCAGAAGTGTAGCATTGTTGCAGCTGAGAATTTGCATTTACCAAAAACTATTGAAGTTGAAAAGATTGGGGATTGCATTTCTGAAGAGCTGTTGGCTAAGGATTCTTTAGCAAAAATTGTTGAAGTTGAAAAGGTTGGGGATTGCATTTCTGGGGAGTTGCAAGACATGGCTAAGAATTCTTTACCAACAACGGTTGAAGTTGAAAAGGTTGGGGATTGCATTTCTGAGGAGGTGCAAGCCTTGGCTAAGGATACTTTAACAACAACTATGGAAGATAATGAGGATGCAAGGCAGACTGTAGAGGCAGATGTATCTAGTCCACAAGATATAAATGATAATGAGGCTGATCATGTGGAAAAGGGTCAAGCTTCTATCCCCAGTAATTGTGAACAAAGGCCTAATTTGATGGAAAAGAATAGTACGGCACGTGTTGATGAGTGGGATTCTATAGATGGTCTGGAGGGTGTAAGTAGATTTAATTTGCCTAGTCCCAAGAGGAGAAAACTTCCTCCATTAAAGATTTATAAACCAACCGACATTACAAAGAGGAGAAAAGCAAAAAGGTGGAGTCAGTTAGAAGAGGATACACTTAAAAATGGCGTAGAGAAGTTTGGCAAGGGAAATTGGAAGTTAATCCTAAATGCTCACCAAGATATATTTGAGGAGAGAACGGAAGTTGATTTGAAGGACAAATGGAGGAATATGACGCGGTATGAGTTTGCAAATAAATCGTAG 1266 0.4329 MISVSDLDFRIKKIFLLKTLQNDFSSHSITETLLKTLELLEEVFRCDASPVTATMSAAYCAVAVECTIKYLQVNLYNHNAPYLRAVNRIWQLRIPQMIGSGSREGSLLFSVELEQWRKDIETSVLDLQVRERLASIDTRRDAIIKLRAFLEEAWTVMDSSFGPLAATEHKRNQEGEVQKCSIVAAENLHLPKTIEVEKIGDCISEELLAKDSLAKIVEVEKVGDCISGELQDMAKNSLPTTVEVEKVGDCISEEVQALAKDTLTTTMEDNEDARQTVEADVSSPQDINDNEADHVEKGQASIPSNCEQRPNLMEKNSTARVDEWDSIDGLEGVSRFNLPSPKRRKLPPLKIYKPTDITKRRKAKRWSQLEEDTLKNGVEKFGKGNWKLILNAHQDIFEERTEVDLKDKWRNMTRYEFANKS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02501 421 Gene3D - 366 421 - -
Vian4g02501 421 Pfam Myb-like DNA-binding domain 364 412 IPR001005 -
Vian4g02501 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 358 417 IPR017930 -
Vian4g02501 421 PANTHER MYB TRANSCRIPTION FACTOR 8 415 - -
Vian4g02501 421 SUPERFAMILY Homeodomain-like 365 417 IPR009057 -
Vian4g02501 421 ProSiteProfiles Myb-like domain profile. 358 413 IPR001005 -
Vian4g02501 421 CDD SANT_TRF 364 414 - -
Vian4g02501 421 SMART sant 362 415 IPR001005 -
Vian4g02501 421 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02501 Vian-Chr4 41596218 41598217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02501 5 412 Single Myb Histone (SMH) Gene Family AT1G15720 24.700 1.86e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian4g02501 Myb_DNA-binding 3.8e-08 CL0123