Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02490 ATGGCTGATTACAACAACATTGAGGGAAGTGAAGAACTACAGTTAGCTGGTTTTGTTGCTCCGCGGGCTTTGATCGGACCAGCCCTACACCTCCAAGCTCAGAACCCGACCCAACACACCGAGAACGACGGAGATGGGGCCTCCAACACCGCTCGGCGCCCACGTGGACGGCTTCCAGGATCCAAGAACAAGCCCAAGCCACCACCCATCATAGTCACGTGCGACAGTGCGAATGCCCTACACTCGCACGTGCTGGATATCTCCCTCGGTGCTGAGGTGATGGAGAGTCTCTCAACATACGCATGCCGCCGAGGGAGAGGAGTTTGTGTGCTCAGTGGCACTGGCACGGTGGCCAATGTTGCACTCCGTCAACCGGCGGGAAGCGTGCTCATGTTCCCCGGACTGTTCGAAATAGTTTCCATAACTGGGACGGGACAGGTGGTTGGGGGCATCGTGGTGGCCCCTCTGATAGCTTCGAGTGACGTGGTGTTGGTGGCTGCTTCCTTCGCTAACGCCATGTTGGAAAGGTTGCCCTTGTCCTTGAATCACCACCATGATCACGATGAAGATCCAGCTGCCGTCACCGGAAATGGACTGGTGGGAGATGGAAGGAACAACCCCTTCTTGTGGTGGTTGCAGAGTGAGCTATTTGAATCGGGTGGAAGTGGAAGTGCATCATCTCATGCACCACCCAAAGCTTCTCCTTTCTAG 711 0.5584 MADYNNIEGSEELQLAGFVAPRALIGPALHLQAQNPTQHTENDGDGASNTARRPRGRLPGSKNKPKPPPIIVTCDSANALHSHVLDISLGAEVMESLSTYACRRGRGVCVLSGTGTVANVALRQPAGSVLMFPGLFEIVSITGTGQVVGGIVVAPLIASSDVVLVAASFANAMLERLPLSLNHHHDHDEDPAAVTGNGLVGDGRNNPFLWWLQSELFESGGSGSASSHAPPKASPF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02490 236 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 179 - -
Vian4g02490 236 Gene3D - 81 145 - -
Vian4g02490 236 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 144 IPR005175 -
Vian4g02490 236 ProSiteProfiles PPC domain profile profile. 77 202 IPR005175 -
Vian4g02490 236 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 143 195 IPR014476 GO:0003680
Vian4g02490 236 MobiDBLite consensus disorder prediction 34 69 - -
Vian4g02490 236 CDD DUF296 83 169 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02490 Vian-Chr4 41467138 41467910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02490 47 179 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 54.545 1.97e-48 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02490 - - gmx:100778715 216.468