Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02488 ATGGCGTACCAAGCGATCCAGGGTCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAGATACTCAATTCTCCTTTCGGAGACACCACTTACACCAAAGTCTTCGTCGGAGGGTTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGCGAGATTCTCGAGGCCGTCGTCATCACCGATAAGAACACAGGGCGATCCAAGGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAACTCCTGTTATTGATGGTAGAAGGGCGAACTGTAATCTAGCTTCACTTGGTCGACCACGACCCCCTTTGCCTTATGGACGGGTAAGACCTGCCTCCCCTTATGTTGGAAGTGTGCAAACACCTCGCGGTGGCTATGTTGGAGGCTTTGGGTACCAGCAACCGCTTTCTTACAGCTATCAACAAGGATTAGTTTACCCTCCATATGGGTATACGGCATATGGACCAGAGTACATCTACCCACAGAGTCTGTATAACCCATATATGGGGCAACAGTACCTTCAGTTATATGGAGTGCCTGGAACAGTGAATACAACTATTTACCCCTATGGACAATTGGGTCAGGCTGTACCTAGTGGTCATGGTTATTCGGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGGGGATCTAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCCTCATTTCCCAGTGGAATTGCTGCACCGGTTCCTGGCCAACCGCAATTTATTGTTCCTGCTCCTTCTCCTCAGTTCATGCAAGGTGGTGGTCCTGACCAAACAGCTGGGTGA 858 0.5093 MAYQAIQGPSSGSSSSSGFQILNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRVRPASPYVGSVQTPRGGYVGGFGYQQPLSYSYQQGLVYPPYGYTAYGPEYIYPQSLYNPYMGQQYLQLYGVPGTVNTTIYPYGQLGQAVPSGHGYSAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASFPSGIAAPVPGQPQFIVPAPSPQFMQGGGPDQTAG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02488 285 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Vian4g02488 285 SUPERFAMILY RNA-binding domain, RBD 31 144 IPR035979 GO:0003676
Vian4g02488 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Vian4g02488 285 SMART rrm1_1 33 105 IPR000504 GO:0003723
Vian4g02488 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Vian4g02488 285 Gene3D - 4 117 IPR012677 -
Vian4g02488 285 CDD RRM_RBM24_RBM38_like 32 107 - -
Vian4g02488 285 PANTHER BOULE-RELATED 10 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02488 Vian-Chr4 41451905 41454575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02488 21 108 C2H2 Transcription Factor Family AT2G19380 44.318 1.30e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02488 - - gmx:100782606 540.036