Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02485 ATGAGCATGTCGGGATCTGACATGGTAACCAGGGACCAATTCTCGGTTGGGATGCACAACCCTCAATCCCAACCTCAACAACAACAACCTCAACTTCATCAAAACATGCGTATGGACTATGCTGCTGCTGATGGGGCCGCGGTTTTCGGCGCCCCTACCATCAACATCAACAACATCAACGGGGGTGAATCCTCTCCAGTGAGTGTGCCTCCGGGCTTGGGCCTGGGCCATACCCATCCCCAGGGCATGGTGGATAACTCCACTGAGACACTCAAGAGAAAGAGGGGAAGGCCCAGGAAATACGGGCCTGATGGTGGCATGGCTTTGAGCTTGAACACTACCTCTCCTCCTGGTGGGGCCTCGGTACCTGTTGGCCATTCCGGTGGGGCATTTCCGACGGCTCCTCTCTCTGATTCTGCCTCTGCCGGTACCGGGAAGCGTAGGGGCAGACCTCGTGGTTCTGTTAACAAGAATAAGAAAAGCTCAAAGTTTTCTGGGCCAGGAGGTTTCTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGTCAATTTCCCAGAGTGGTTCTAGAAATGTTTGCATCTTAAGTGCAAATGGATCCATATCTAATGTGACACTTCGACAGCCTGCATCGTCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCTTATCACTTGGTGGTTCTTTGTTTCTTACTGAAAATGGTTCTCATGGCGGAAGAACTGGAGGCCTGAGTGTGTCCTTGTCAGGGCCAGACGGCCGCGTTTTGGGGGGTGGAGTCGCAGGCCTTTTGGTGGCTGCCTCCCCTGTTCAGATTGTTTTGGCTAGTTTTGTTTCCGATGGCAAGCAATCCAAGTCTGCAAAGCGGATGAGGAATGTATCTGCAGCAGAAAAGGTTGCCACAGCTGGTGGCCAAAGCAGCTCACCATCAAGGGGCACTCTGAGTGAATCTTCAGGTGGGGTCGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGACTGCATCAACAATATCAACAATATCAACAGCACCACCCCAACGCCAGGCTTTTCAGGCATGCCCTGGAAGTAA 1098 0.52 MSMSGSDMVTRDQFSVGMHNPQSQPQQQQPQLHQNMRMDYAAADGAAVFGAPTININNINGGESSPVSVPPGLGLGHTHPQGMVDNSTETLKRKRGRPRKYGPDGGMALSLNTTSPPGGASVPVGHSGGAFPTAPLSDSASAGTGKRRGRPRGSVNKNKKSSKFSGPGGFFTPHVITVKAGEDLSARIMSISQSGSRNVCILSANGSISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLTENGSHGGRTGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDGKQSKSAKRMRNVSAAEKVATAGGQSSSPSRGTLSESSGGVGSGSPLNQSTGDCINNINNINSTTPTPGFSGMPWK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02485 365 ProSiteProfiles PPC domain profile profile. 168 310 IPR005175 -
Vian4g02485 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 173 287 IPR005175 -
Vian4g02485 365 MobiDBLite consensus disorder prediction 1 33 - -
Vian4g02485 365 MobiDBLite consensus disorder prediction 307 365 - -
Vian4g02485 365 MobiDBLite consensus disorder prediction 308 359 - -
Vian4g02485 365 SMART AT_hook_2 92 104 IPR017956 GO:0003677
Vian4g02485 365 SMART AT_hook_2 145 157 IPR017956 GO:0003677
Vian4g02485 365 MobiDBLite consensus disorder prediction 76 166 - -
Vian4g02485 365 CDD DUF296 172 286 IPR005175 -
Vian4g02485 365 Gene3D - 173 303 - -
Vian4g02485 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 346 IPR039605 GO:0003680
Vian4g02485 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02485 Vian-Chr4 41433208 41436225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02485 82 365 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 51.351 1.02e-77 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02485 - - pvu:PHAVU_009G008300g 548.125