Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02483 ATGGAAGAGGTACTGTGTGAACTCAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCACCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTTATAACCTTTTACCTCGCTTCAAAAGTCTTCAATGGCTGCTTCACCACCGTCAAGTTTGCCGAGGTTGATCTCAATAGATGCGAGCCTTGGGAACTTCCAGGTATATATTCTTCTGTCCAAACCCTCACAACAAGGGTGTGCATGCTCAGTTTCATGATGACAGTAGATACTATTTTTAAGCCTGCTCAGAGACAGATTAAAAGAGTTTTAGTCATTAGATTATATTGTGGGCTATCCACTAGCATGTCACCTCAAATTTCTAATGGCGTCATCAACTTCCCATCTTTGGATCTTGTTCTTATGGATGTTTTCCATGGTGTGTGTGGTGTACATGTATTGAATATTGATGTGAGAAAAGTTATGGAAGCAGATGTGGCGAAGATGGGAGAGAGAGAGTGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCCACTGGACTGAGAACAAACAGGGCCACAGGAGCTGGGTACTGGAAAGCCACTGGGAAGGACAAGGAAGTGTTCAGTGCATCAAGTGGAACCCTACTTGGGATGAAGAAGACCCTTGTTTTTTACAAAGGAAGGGCCCCTCGTGGAGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTGGACGGTGACTTTTCCCTTCCTCACCCTCACCCTCATCACATCTCAAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCCGGGGAAAAGAGAACTCCATTGCTCCAAAACCAAGGACAAGGACATTCAGATGCTTCTTCTTCTCCAACAAAAAGTTCTTTACCTCCTTTACTTCCCAGCCCAGCTTCCTTTCCGTTGGAACTACAAGACCAAAATCACCTCTCTCATTCTCACCCTTATCTTTTCCCATTGCATGCATCACCGCAACTCACTAACACCAGAAACCATCCATCATTTTCTGACCTATTCTTCAAGCCCTCGCCCCTCTCACAGCAACAAAACTGCATCCTCAAGGAAAAAACAGCTCCAAAAGTAATCAAAACGGAGGAGGCTACAGCATTGTATCAGTACCATTTACTAGGTGACAGTGACAACCTGCGGTTAAACCAAAACCTAAGTGATTTCCCAAACCCTTTCGCTGATGTTGAGGTGGATGGTGCTGGGCTGATGGCATTCGCAGGAGGTCCAAATGGTGAAGTTAGGGACATGTCCCCTTCGACAGCCTTCAAAAGGGTGGTAGGGTTGCAGCAGCTCATAGATGCTGCTCATATCGGAATAGATTCTTGGCCCCTGGCCCAGCATGTTTAA 1359 0.4562 MEEVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGCFTTVKFAEVDLNRCEPWELPGIYSSVQTLTTRVCMLSFMMTVDTIFKPAQRQIKRVLVIRLYCGLSTSMSPQISNGVINFPSLDLVLMDVFHGVCGVHVLNIDVRKVMEADVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVFSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSLPHPHPHHISKEEWVICRIFHKSGEKRTPLLQNQGQGHSDASSSPTKSSLPPLLPSPASFPLELQDQNHLSHSHPYLFPLHASPQLTNTRNHPSFSDLFFKPSPLSQQQNCILKEKTAPKVIKTEEATALYQYHLLGDSDNLRLNQNLSDFPNPFADVEVDGAGLMAFAGGPNGEVRDMSPSTAFKRVVGLQQLIDAAHIGIDSWPLAQHV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02483 452 ProSiteProfiles NAC domain profile. 19 263 IPR003441 GO:0003677|GO:0006355
Vian4g02483 452 MobiDBLite consensus disorder prediction 270 290 - -
Vian4g02483 452 SUPERFAMILY NAC domain 156 263 IPR036093 GO:0003677|GO:0006355
Vian4g02483 452 MobiDBLite consensus disorder prediction 270 299 - -
Vian4g02483 452 SUPERFAMILY NAC domain 14 68 IPR036093 GO:0003677|GO:0006355
Vian4g02483 452 Pfam No apical meristem (NAM) protein 20 66 IPR003441 GO:0003677|GO:0006355
Vian4g02483 452 Pfam No apical meristem (NAM) protein 152 236 IPR003441 GO:0003677|GO:0006355
Vian4g02483 452 Gene3D NAC domain 129 267 IPR036093 GO:0003677|GO:0006355
Vian4g02483 452 Gene3D NAC domain 28 98 IPR036093 GO:0003677|GO:0006355
Vian4g02483 452 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02483 Vian-Chr4 41420778 41422760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02483 1 65 NAC Transcription Factor Family AT1G76420 72.308 1.98e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian4g02483 NAM 6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02483 - - gmx:100780313 335.109