Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02473 ATGAATTCGTTTCGGGTGGTTTGTTGGGTGGTGTGGTGTCTGGGATTTGTGGGGGCTGCAAACGTGTCGTCCTCGAGACCCGCCATCGTCAACATTGGAGCAATCTTCAACCTCGATTCTATTCTAGGGAAAGTGGCTAAAATTACATTGGAGGAAGCCGTGAAAGATGTTAACGCCGACTCTAGCATTCTATATGGAACTAAAATTGTTCTCACTATGCAAAATTCCAATTACAGCGGTTTCTTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCTATAATAGGACCACAATCTTCTGTGGTTGCGCATATAATATCCCATGTTGCAAATGAACTACGAGTTCCTTTGTTGTCATTTGCCGCAACAGACCCTACCCTGACATCGCTGCAGTTTCCTTTCTTTGTGAGGACAACACAGAGTGATCTGTACCAAATGAAGGCTGTTGCTGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCAATATACGTGGATGATGATTATGGACGGAATGGTGTGGCTGCTTTGGACGATGAACTAGCTGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGGATTAATTCCGGAACTGAAGTCAACCGGGGAGAAATTACTAGTTTGCTGGTGAAAGTGGCACTGATGCAGTCTCGAGTCATTGTTCTCCATGCACAAACTGATTATGGTTTTATGGTTTTCAATGTGGCGCGTTATCTTGGGATGACAAACAATGGCTACGTGTGGATAGTCACAGACTGGCTCTCTTCACTTTTGGATTCTGCTTCTCTCCCTTCAGACACAATGGATGTTCTCCAGGGAGTACTTGTTCTGCGCCAGCATACACCTGACTCAGATAGAAAAAGGGGATTTGTCTCTCGGTGGAACAAGTTGACCGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTACGCTTATGATTCTGTGTGGCTTGTTGCACGGGCCCTTGATGATTTTTTCAGTCAGGGTGGGGTTCTTTCGTCTACGAATTACACAAGTTTGGGTGGTGGTGATGATAAGGGAAGTGATTTGAACCTTGATGCAATGAGCATTTTTGACAACGGAACGCTTCTGCTGAACAACATATTGCAGAGTGATTTTGTTGGACTATCAGGTCGAATGAAATTTGAAGCAGATCGATCTCTCGTTCATCCTGCCTATGATGTGCTTAATGTGGTTGGAACTGGCCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTTTGTCAATTGTATCTCCTGAGATACTGTATGCAAAGCCACCTAATAGATCTAGTGCGAATCAGAATCTTTACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCGCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGGATTGGTGTGCCTATCCGAGTCAGTTATCGTGAATTTGTCTCACCAGTGAAGGGAACTGAGATGTTCAAAGGTTTTTGTGTTGATGTATTCACAGCAGCTCTGAACTTGTTGCCTTATGCCGTTCCTTACCAATTTGTTCCATTTGGAGACGGACACAAAAATCCAAGCTACACAGAACTTGTCCGCTTGATCACAACTGGTTACTTTGATGGTGCCATTGGTGACATTGCTATTGTCACAAATCGGACAAGGGCTGTAGATTTTACACAACCATATGCAGCATCGGGACTTGTTGTGGTGGCCCCATTTACAAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCATTTACTCCTCTTATGTGGATTGTGACTGCATGTTTCTTCCTTTTCATTGGGATAGTTATATGGATTCTGGAACACAGGATCAATGATGAGTTCAGAGGTCCACCTAGACAGCAAATTATAACCTTGTTATGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTGGTCTTGGTCGGTTTGTGATGCTTCTATGGCTATTTGTGGTATTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAACAGTTATCTTCTCCTATCAGTGGAATAGATAGCTTAAAGGCTGGTGATGAACCTATAGGATACCAAGTGGGTTCATTTGCAGAACATTACTTGACTCAAGATATTGGAATATCCAAATCCAGGCTTATTGCCCTTGGAACTCCAGAAGAATATGCTATGGCCCTAAAGCTTGGTCCTAAAAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGGCCTTATGTTGAAATCTTCTTATCAAGCCAGTGCACCTTCAGAATTGTTGGTCAGGAGTTCACCAGAAGTGGCTGGGGCTTTGCATTCCCTCGGGACTCCCCTTTGGCTGAGGATATTTCAACAGCCATTCTACAACTTTCTGAAACGGGTGATCTACAACGGATTCATGACAAGTGGATGACACGAAGCTCTTGTTTAGACAATGCTGAAATCGATTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTATTTCTCATTTGTGGGATAGCTTGCTTTGTTGCTCTTCTTTTGCATTTTTTGCAGATCATGTTCCAGTTACGGAAATCTCCTCCTTCTGAACCTCCATCTTCTACTACTGCCTGGTCAATTTCTGGTCGTTTTCAGAGATTTCTCTCGCTCATTGACGAGAAAGAAGATCCACCAACGAGTAATGGAAGAAAGAGAGAAAGATCACTTGAAGATCAACTGGTAAGGCAGCCAAAGAGGGTACAACTACAACTACAAACAGAAATGGCCTCCTAA 2769 0.4373 MNSFRVVCWVVWCLGFVGAANVSSSRPAIVNIGAIFNLDSILGKVAKITLEEAVKDVNADSSILYGTKIVLTMQNSNYSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTEVNRGEITSLLVKVALMQSRVIVLHAQTDYGFMVFNVARYLGMTNNGYVWIVTDWLSSLLDSASLPSDTMDVLQGVLVLRQHTPDSDRKRGFVSRWNKLTGGSLGLHSYGLYAYDSVWLVARALDDFFSQGGVLSSTNYTSLGGGDDKGSDLNLDAMSIFDNGTLLLNNILQSDFVGLSGRMKFEADRSLVHPAYDVLNVVGTGLRRVGYWSNYSGLSIVSPEILYAKPPNRSSANQNLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSYREFVSPVKGTEMFKGFCVDVFTAALNLLPYAVPYQFVPFGDGHKNPSYTELVRLITTGYFDGAIGDIAIVTNRTRAVDFTQPYAASGLVVVAPFTKINSGGWAFLQPFTPLMWIVTACFFLFIGIVIWILEHRINDEFRGPPRQQIITLLWFSLSTLFFSHRENTMSGLGRFVMLLWLFVVLILTSSYTASLTSILTVQQLSSPISGIDSLKAGDEPIGYQVGSFAEHYLTQDIGISKSRLIALGTPEEYAMALKLGPKKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAEDISTAILQLSETGDLQRIHDKWMTRSSCLDNAEIDSDRLQLKSFWGLFLICGIACFVALLLHFLQIMFQLRKSPPSEPPSSTTAWSISGRFQRFLSLIDEKEDPPTSNGRKRERSLEDQLVRQPKRVQLQLQTEMAS 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02473 922 Gene3D - 462 577 - -
Vian4g02473 922 CDD PBP1_GABAb_receptor_plant 31 423 IPR044440 -
Vian4g02473 922 Gene3D - 145 420 - -
Vian4g02473 922 FunFam Glutamate receptor 462 577 - -
Vian4g02473 922 MobiDBLite consensus disorder prediction 885 904 - -
Vian4g02473 922 SUPERFAMILY Periplasmic binding protein-like II 443 810 - -
Vian4g02473 922 SUPERFAMILY Periplasmic binding protein-like I 25 459 IPR028082 -
Vian4g02473 922 PIRSF IGluLR_plant 1 921 IPR017103 -
Vian4g02473 922 Pfam Receptor family ligand binding region 51 405 IPR001828 -
Vian4g02473 922 Pfam Bacterial extracellular solute-binding proteins, family 3 488 809 IPR001638 -
Vian4g02473 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 857 IPR015683 -
Vian4g02473 922 Gene3D - 757 815 - -
Vian4g02473 922 FunFam Glutamate receptor 578 708 - -
Vian4g02473 922 PRINTS Metabotropic glutamate GPCR signature 98 124 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vian4g02473 922 PRINTS Metabotropic glutamate GPCR signature 165 182 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vian4g02473 922 PRINTS Metabotropic glutamate GPCR signature 130 149 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vian4g02473 922 PRINTS Metabotropic glutamate GPCR signature 149 165 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vian4g02473 922 FunFam Glutamate receptor 145 297 - -
Vian4g02473 922 CDD GluR_Plant 465 807 - -
Vian4g02473 922 Gene3D - 578 708 - -
Vian4g02473 922 SMART GluR_14 468 810 IPR001320 GO:0015276|GO:0016020
Vian4g02473 922 Gene3D - 49 395 - -
Vian4g02473 922 FunFam Glutamate receptor 704 812 - -
Vian4g02473 922 Pfam Ligand-gated ion channel 810 840 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02473 Vian-Chr4 41349480 41353099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02473 9 903 Ion Channels AT1G42540 63.877 0.0 1226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02473 K05387 - gmx:100777478 1602.8