Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02472 ATGTATGATTTGGGAGTGGTTATGCCTGTGGGAATGGATATTCCTCCTCCTTTTAGTGTGATAGAGGACAAAGACAGTGCATTTACAATGGAAGATGATAAATCGGGAGATTTGGATAATCTAAAACCAATAGTCAAGGGTAAGCCTCCCCGGCATGTTTCGAGTTTGAGGCACAGCGTTAGCACCACCAGATTGATGGCAGTAGCAGATTTGAGTTTGGATGTGGGGGTTACTGGAAAGTCATCTTCTGAAGAAAAGACGGAATTTCTACCAATATTTCGGTCAGGAAGTTGTGCTGAAAGAGGACCTAAACAGTATATGGAAGACGAACACGTATGCATTGATGATCTTATTCAGCATATAGGTCCCGCCTCCACTATTCCTTTACCTGGAGCTTTTTATGGGGTGTTTGATGGCCATGGAGGTACAGACGCAGCTTTGTTCATAAGAAATAACATCCTCAAATTCATAGTTGAGGACTCCCATTTTCCAACTTGCGTGGGGCAGGCAATTACAAGTGCGTTTCTGAAAGCAGATTATGCATTTGCAGATTCTAGTTCTCTTGATATCTCCTCGGGGACCACTGCTTTAACTGCTCTTGTATCCGGAAGGACCATGATAGTTGCCAATGCCGGGGACTGCAGAGCTGTACTGGGGAGGCGAGGTAGAGCAATTGAGATGTCAAAAGACCAGAAACCAGATTGCACTTCGGAAAGGCTAAGGATTGAGAAACTTGGTGGAGTGGTGTACGATGGATACCTGAATGGGCAGTTATCTGTTTCCCGTGCCTTGGGAGACTGGCACATGAAGGGTCCAAAGGGTTCTGCCTGCCCCTTGAGTTCTGAGCCAGAGCTGCAGGAAATCATCCTCACTGAGGATGACGAGTTCTTGGTCATGGGCTGTGATGGCCTATGGGATGTAATGAGTAACCAATGTGCTGTGACCATGGCAAGGAAAGAACTAATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGCTGGTCAGAGAGGCTCTAAAGCGTAACTCGTGTGATAATTTGACTGTTATAGTGATATGTTTCTCCCCAGATCCTCCTCCTAGGATAGAGACACCTCCTTCTCGGGTCAGGAGGAGTATATCAGCAGAAGGCCTCAATTTACTTAAGGGTGTGTTGGATTGTTAG 1164 0.457 MYDLGVVMPVGMDIPPPFSVIEDKDSAFTMEDDKSGDLDNLKPIVKGKPPRHVSSLRHSVSTTRLMAVADLSLDVGVTGKSSSEEKTEFLPIFRSGSCAERGPKQYMEDEHVCIDDLIQHIGPASTIPLPGAFYGVFDGHGGTDAALFIRNNILKFIVEDSHFPTCVGQAITSAFLKADYAFADSSSLDISSGTTALTALVSGRTMIVANAGDCRAVLGRRGRAIEMSKDQKPDCTSERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSSEPELQEIILTEDDEFLVMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVICFSPDPPPRIETPPSRVRRSISAEGLNLLKGVLDC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02472 387 Pfam Protein phosphatase 2C 95 346 IPR001932 -
Vian4g02472 387 ProSiteProfiles PPM-type phosphatase domain profile. 94 354 IPR001932 -
Vian4g02472 387 SMART PP2C_SIG_2 109 354 IPR001932 -
Vian4g02472 387 SMART PP2C_4 84 352 IPR001932 -
Vian4g02472 387 PANTHER PROTEIN PHOSPHATASE 2C 83 352 IPR015655 GO:0004722|GO:0006470
Vian4g02472 387 Gene3D - 72 357 IPR036457 -
Vian4g02472 387 CDD PP2Cc 93 354 IPR001932 -
Vian4g02472 387 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
Vian4g02472 387 FunFam Probable protein phosphatase 2C 22 79 357 - -
Vian4g02472 387 SUPERFAMILY PP2C-like 88 355 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02472 Vian-Chr4 41341691 41344350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02472 10 386 PP2C-type Phosphatase Gene Family AT2G33700 71.466 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02472 K14803 - gmx:100778015 720.694