Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02469 ATGGCTGCGAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGATGATAGTTTTCATTTTGAGAGGTTGCACATTGAGCCTCTGTACGATGCTTTTGTATGTCCATTGACGAAGCAAGTGATGCGTGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAGTGTAGGGAGAGTGGAAGGAGACTGGTTTGCCCTTTGACTCAACAGGAGTTAAGAAGCGCAGAACTGAATCCAAGCATGGCTTTGCGTAACACCATTGAAGAGTGGACTACCAGGAATGAAGCTGCACAGCTGGACATAGCTCGCAGGTCGTTGAATATGGCGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTGCAGTACATCTGCCAAAGAAGTCGATCAAACAAACACACTGTCCGCAATGCAGGGCTTATACCAATGATTGTTGACATACTGAAGAGTGGAAGCCGTAAGGTTCGATGTAGAGCTCTGGAAACCCTTAGAGTCGTGGTAGAAGAAGATGATGAGAACAAGCAATTGTTGGCTGAAGGGGATACTGTGCGCACTATAGTGAAATTCCTTTCCCACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAACTCTCGAAGTCTGCTACCCTCTGTGAGAAGATTGGTTCAATCAACGGAGCCATTCTAATATTAGTAGGGATGACAAGCAGCAATTCAGAAGATCTTCTCACTGTTGGGAAGGCTGAGGAAACATTGTCGAATCTGGAGAGGTATGAGGCTAATGTTCGACAGATGGCTGAATGTGGTAGATTGCAGCCTCTTCTTAACCAACTTCTTGAAGGTCCACCAGAAACCAAACTCGCCATGGCGGGATTCCTTGGGGAGCTGGTTTTAAACAATGATGTTAAAGTTCTTGTTGCTAGAACTGTGGGTTCATCTCTGATCAATATAATGAGAAGTGGAAATATGCAATCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGATCCAAGTGCAAAGATATTAATAGAGGCCGGAATACTTGCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAACCTTCTTCCCACACGATTGAAAGAGATCTCTGCTACGATTCTTGCCAGTGTTGTAAACTCTGGAGAAGACTTCTATTCCATTTCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACTGGTCCAGCCATAGAGTGCAAACTTCTACAAGTTCTTGTTGGACTTACTACTTCTCCAACTACAGTTCTGAGTGTTGTGTCTGCTATCAAAAGCTCTGGTGCCACAATCAGTCTAGTTCAGTTCATTGAAGCACCACAGAAAGATCTGCGTCTGGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAACTGATGCACTACGTGGCTCAGTTGGACAGCTTGGAAGTCTAATAAAAGTCATATCAGAAAATACAGGGATCAGTGAAGAGCAGGCAGCGGCAGTCGGCCTTTTAGCCGATCTACCCGAAAGGGACTTGGGCCTCACAAGACAGCTACTGGATGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGATTGCCATCAGACAGCGAGAGATCAGAGGCAATCGCTTCATCACACCATTTCTTGAAGGGCTTGTGAAGATTGTTGCAAGGGTTACTTATGTCTTGGCTGAAGAACCTGATGCCATTGCACTCTGCCGTGACTACAACCTTGCTGCACTTTTTATTGACCTGCTTCAGTCGAATGGACTGGACAACGTGCAGATGGTATCTGCCACAGCTCTGGAGAATCTATCCATAGAGTCAAAAAACTTAACCAAATTACCGGAGGTGCCGCCGCCCAGCTATTGTGCTTCGGTGTTTTCATGCTTCAGCAAGCAGCCAGTGATAAGTGGATTGTGTAGGCTCCACAGAGGAATCTGCTCTTTGAAGGAAACGTTTTGCCTGTATGAAGGGCAGGCAGTGCCCAAGTTAGTAGGGCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTGGCTGCATTATCGACTTTGATAGATGATGGAGTAGACATAGAACAAGGGGTGGCAATTTTGGTTGAAGCAGAGGGAGTGAAGCCTATACTTGATGTGCTACTTGAGAAGAGAACAGAGACATTGAGAAGGAGAGCAGTTTGGGCAGTGGAGAGACTGTTGAGAACGGATGATATAGCCTGTGAGGTTTCTGCAGACCAGAATCTGAGCACTGCACTTGTGGATGCATTCCAACATGGTGATTATCGAACTAGACAGATCGCTGAGCGTGCTCTCAAACATGTTGATAAGATACCAAACTTCTCAGGAATCTTTCAGAACCTAGGATGA 2442 0.4525 MAASWDGSNDPGSQSDDSFHFERLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRRLVCPLTQQELRSAELNPSMALRNTIEEWTTRNEAAQLDIARRSLNMASPENETLQALKYVQYICQRSRSNKHTVRNAGLIPMIVDILKSGSRKVRCRALETLRVVVEEDDENKQLLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSINGAILILVGMTSSNSEDLLTVGKAEETLSNLERYEANVRQMAECGRLQPLLNQLLEGPPETKLAMAGFLGELVLNNDVKVLVARTVGSSLINIMRSGNMQSREAALKALNQISSCDPSAKILIEAGILAPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFYSISFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGQELTDALRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGLTRQLLDEGAFVMVISRVIAIRQREIRGNRFITPFLEGLVKIVARVTYVLAEEPDAIALCRDYNLAALFIDLLQSNGLDNVQMVSATALENLSIESKNLTKLPEVPPPSYCASVFSCFSKQPVISGLCRLHRGICSLKETFCLYEGQAVPKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVAILVEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIACEVSADQNLSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFQNLG 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02469 813 CDD RING-Ubox_PUB 30 87 IPR045210 -
Vian4g02469 813 Gene3D - 317 486 IPR011989 -
Vian4g02469 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Vian4g02469 813 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 711 IPR000225 GO:0005515
Vian4g02469 813 Gene3D - 573 804 IPR011989 -
Vian4g02469 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 115 IPR013083 -
Vian4g02469 813 SUPERFAMILY ARM repeat 119 531 IPR016024 -
Vian4g02469 813 Gene3D - 116 316 IPR011989 -
Vian4g02469 813 SUPERFAMILY RING/U-box 23 110 - -
Vian4g02469 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Vian4g02469 813 SUPERFAMILY ARM repeat 406 799 IPR016024 -
Vian4g02469 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 809 - -
Vian4g02469 813 SMART arm_5 717 759 IPR000225 GO:0005515
Vian4g02469 813 SMART arm_5 139 179 IPR000225 GO:0005515
Vian4g02469 813 SMART arm_5 181 221 IPR000225 GO:0005515
Vian4g02469 813 SMART arm_5 347 392 IPR000225 GO:0005515
Vian4g02469 813 SMART arm_5 307 346 IPR000225 GO:0005515
Vian4g02469 813 SMART arm_5 265 306 IPR000225 GO:0005515
Vian4g02469 813 SMART arm_5 590 631 IPR000225 GO:0005515
Vian4g02469 813 SMART arm_5 672 713 IPR000225 GO:0005515
Vian4g02469 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02469 Vian-Chr4 41324201 41328535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02469 2 813 U-box Gene Family AT1G76390 64.865 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02469 - - gmx:100789746 1420.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02469 4 41324201 41328535 Vian4g02469 4 41324201 41328535 ECH