Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02467 ATGTCTCCGCAAAATGCAATCCAATCCGAAACAAAACTGAGTCATTTTCTTGTTTCTGCAAAGAAAAAGGAGAAAGAAATGGAGGCAGAGCATCATCAAGAGGCCTCAATCGCTATCGGAAGCCTCTACGTTAAAGTGATGACCGACGAACAAATGGAACTGCTAAGGCAACAGATATCTGTCTACGCCACCATCTGCGAACAGCTTGTTGAGATGCACAAAGCAATAACCACCCAACAGGACCTCGCAGGACTGAGGCTGGGTAATTTGTACTGTGATCCGTTGATGGCGTGTTCTGGACACAAGATAACTGCGAGGCAACGTTGGACTCCAACGCCTCTGCAACTTCAAATTCTGGAGCGAATTTTTGATGAGGGAAACGGCACTCCAAGCAAGCAGAAGATCAAGGATATAACGATTGAACTGGGCCAACATGGTCAAATATCAGAGACAAATGTGTATAACTGGTTCCAGAACAGAAGGGCTCGTTCAAAGAGGAAGCAACTCGCTCCCGCACCAAATGTTGCGGAGCCAGAAACCGAGACGGAAATCGATTCTCCGAGAGAGAAAAAGATACGCGCCGAGAGCGTTCAGGTTGCTCAACCCTTTGAGAATTCATCACCTCATAGGATCAAGGACATGTACATCCACAGTCCTGACTTAGGATTTGAGCAATTGATGAGTAAAATAGATGTTGCAGGCTGTTACGGCTCTTATTTTCTTTGA 726 0.4587 MSPQNAIQSETKLSHFLVSAKKKEKEMEAEHHQEASIAIGSLYVKVMTDEQMELLRQQISVYATICEQLVEMHKAITTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQLAPAPNVAEPETETEIDSPREKKIRAESVQVAQPFENSSPHRIKDMYIHSPDLGFEQLMSKIDVAGCYGSYFL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02467 241 SUPERFAMILY Homeodomain-like 105 168 IPR009057 -
Vian4g02467 241 SMART HOX_1 104 171 IPR001356 GO:0003677
Vian4g02467 241 ProSiteProfiles 'Homeobox' domain profile. 102 167 IPR001356 GO:0003677
Vian4g02467 241 CDD homeodomain 106 168 IPR001356 GO:0003677
Vian4g02467 241 MobiDBLite consensus disorder prediction 165 190 - -
Vian4g02467 241 Gene3D - 107 170 - -
Vian4g02467 241 Pfam Homeodomain 106 166 IPR001356 GO:0003677
Vian4g02467 241 PANTHER WUSCHEL-RELATED HOMEOBOX 13 26 224 IPR044559 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02467 Vian-Chr4 41300868 41301952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02467 42 239 Wox Gene Family AT4G35550 54.626 3.02e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian4g02467 Homeodomain 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02467 - - var:108342525 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02467 4 41300868 41301952 Vian4g02467 4 41300868 41301952 ECH