Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02465 ATGAAAGGAGGCAAGTCAAAAACTGAATCTAAGAGAGGCGATGCCAATGAAATATCCGACACAGTTATAATTCATGACTTTCTGGATCTCAGATCTGAGATCTCTGTTACAGTTATTTTGATTTTAGATTTCATTGATTTTTCTTCGATGTTCAGACTTGCTGTGAATAAGAAGGGTGCGCCAGCCAAGGCCAGGAAACCAGCAGGCAAGGGCAAGGCTGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCCAGTGCTTTCTTTGTTTTCATGGAGGAGTTTAGGAAACAATTTAACAAGGAACATCCTGACAACAAAGCCGTGTCTGCTGAAAAAGCACCATATGTGGCAAAGTCTGAGAAAAGAAAGGTCGAGTATGAGAAAAGCATGAGAGCCTACAACAAGAAACAGGCGGAAGGTCCTACTGGTGGAGATGAGGAAGAGTCCGAGAAGTCAGTATCTGAGGTGAATGATGAGGATGATGACGAGGAGGGCAGTGCCGAGGAGGAGGATGACGATTAG 522 0.4483 MKGGKSKTESKRGDANEISDTVIIHDFLDLRSEISVTVILILDFIDFSSMFRLAVNKKGAPAKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAEKAPYVAKSEKRKVEYEKSMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSAEEEDDD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02465 173 MobiDBLite consensus disorder prediction 151 173 - -
Vian4g02465 173 SMART hmgende2 79 135 IPR009071 -
Vian4g02465 173 MobiDBLite consensus disorder prediction 99 173 - -
Vian4g02465 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 169 IPR031061 -
Vian4g02465 173 MobiDBLite consensus disorder prediction 58 86 - -
Vian4g02465 173 Pfam HMG (high mobility group) box 80 106 IPR009071 -
Vian4g02465 173 MobiDBLite consensus disorder prediction 115 150 - -
Vian4g02465 173 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 80 134 IPR009071 -
Vian4g02465 173 Coils Coil 116 136 - -
Vian4g02465 173 Gene3D High mobility group box domain 63 111 IPR036910 -
Vian4g02465 173 SUPERFAMILY HMG-box 71 137 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02465 Vian-Chr4 41285907 41287303 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vian4g02465 HMG_box 1.5e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02465 K25507 - gmx:100500173 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02465 4 41285907 41287303 Vian4g02465 4 41285907 41287303 ECH