Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02459 ATGAGAGATGGTGGTGTGACATCATCATCTGCTTCCATGATGGAAGCTCCACCACCAGATGGAACAATAACAACAACAACAATGGATTTTGACTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGTTGATGGATCTGACTTCTTGCCGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCAGCCTTGGAGACTAACCACGATGAATCCCAGGGTGCTGCTTTTGGAACACAACAAGAAGGCCACAACAACAACAACAACATGGTTAATGTTGTTGTTGGTGGTGGTCAAGAGTTGCAGCCTGAAACTATTACAACTGAAGGAGCATCCGAAGGGGTGAGAAGATGGAGGTTTGCACCCACACCTGCTCCTGCACCTGGACCTTCCATAATGGAGAAGCTAATAAGGGCTCTCATGTGGATCAAAGACTACAATAGGAACAAAAACATGCTAATACAGATATGGGTGCCGGTTCATAGAGGGGGTAGACCGATTCTCGCAGCTAATGATATTCTGTTCTCACTCGATTCAAGGTCTGTAAACCTTGCAAAGTACCGCGAAATCTCTGTGAGGTACGAGTTTTCTGCGGAGGAAGGTGAGGTCAAGGAGTTGGTGCCAGCAGAGAAAGGTGGCTCCAAGGAATTGTTACCAGGATTACCTGGTAGAGTGTTCAGAGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGACGAGTATCCGCGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGGTCACTAGCAGTACCAATCTTTGAGCAAGGCAGCAAGATGTGCTTGGGAGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATACTCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCATGCAACAGGTCCTACGAAGCTGTACTACCTGAGATTCAACTGGTGTTGAGATCTGCATGTGAAATGCATAGATTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGATGCCGGCATTCAGAAGATAATTATCTACTTTGTATATCTCCTGTGGAGCAAGCTTGCTATGTTGGTGATCCCAAAATCAAGCCTTTTCACGAGTCTTGCACTGAACACCACTTGTTGAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTGTCACCAACCAACCATGTTTCTCAGATGACATAACATCCTTAAGCAAGAAAGACTATCCACTGTCTCATCATGCAAGGTTGTTTGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTTGAATGATACGGATGACTTTGTTTTAGAGTTCTTCTTGCCTGTAGATTGCATTGACAGTGAAGAGCAGAGAAAGATGCTCACATCATTGTCCATCATTATACAAAAGCTTTGTCACAGCTTGCGGGTTATAAGTGATAAGGAATTGGAGGAAGCTAACTTGTCAATTGATGAAATGATTTCCTCTGTAGAGGGTGGATTTGATAGGACTGTAATTTGTGAGGAACTTCAACATAAAGGGACGGTTGCCTCATTGGATACTGAAGAAAAAATAAGTGAAACAACTGGTAGAAAGTTCTCTGACCCAAGGCAGCAGCAAGAAAGTCCTATTTTAAAAGGAAACTTTGACTGTGTCAGGGAGTGTTCTACTTCTGTTCAGGGTAACTTATCAAGTGTGAGAATGAGTAAAATGGGAGAGAGAAGACGGGCCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCAGGAAGCTTAAAAGATGCTGCAAAGAATATCGGTGTGTGTACTACAACCTTGAAAAGGATCTGCCGGCAACACGGGATAAAGCGTTGGCCCTCCCGAAAGATCAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTGATTGACTCGGTTCAAGGTGCCTCTGGGGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCAGAACTAGCTTCTCCAAACTTATCAGGAACAAGCATGTTCTCAACTCTGAATCAAACTGATAATCCAAACTCAATAAGCACGCAGCCAGATCCTGGCTCATTGAGTCCAGAAGGCACATCAAAATCTCCCTCTTCCTCCTGCGGTCAGAGTTCCATTTCAAGCCATTCCTGCTCCAGCATGTCAGAGCTACAGCAGCAGCATCACACAACCAACATTGCAGGTAACAAAGATTCCACCATGGCTGGTGAAGATTCTGCAGATGTCGCGCTGAAGAGGATCAGAAGCGAAGCAGAGCTTAAAAGCCTGAATGAGGATAAAGCAAAGCTCTTGTCAAGATCACTGAGCCAGGAAACACTTGGTGAGCACCCAAAAAACCAGTATGAACGACCCTTATTGAAAACAAGTAGCAAGGTGGATGCACACAGAGTAAAAGTCACATATGGTGATGAAAAAGCTCGGTTTCGGATGCCCAAGAACTGGGGCTATGAAGATCTTGTGCAGGAAATTGGTAGGAGATTTAATGTGAGTGAAATGAGCAAATTTGATGTGAAATACTTGGATGATGACAGTGAGTGGGTACTACTCACTTGTGATGCTGACTTAGAGGAGTGCATTGATGTTTGTCGATCTTCTGAGAAGGCCACCATCAAACTAAGCCTACAAATTTCTAGTCATAGTTTGAGAAGTTCTTTAGAATTTAGATAA 2703 0.4421 MRDGGVTSSSASMMEAPPPDGTITTTTMDFDYMGELFLDGCWLEASVDGSDFLPQSPSFSNPLFDPSFSWPALETNHDESQGAAFGTQQEGHNNNNNMVNVVVGGGQELQPETITTEGASEGVRRWRFAPTPAPAPGPSIMEKLIRALMWIKDYNRNKNMLIQIWVPVHRGGRPILAANDILFSLDSRSVNLAKYREISVRYEFSAEEGEVKELVPAEKGGSKELLPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGSLAVPIFEQGSKMCLGVIEVVMTTQQINYTPELESVCKALEACNRSYEAVLPEIQLVLRSACEMHRLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVEQACYVGDPKIKPFHESCTEHHLLKGEGVAGGAFVTNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSILNDTDDFVLEFFLPVDCIDSEEQRKMLTSLSIIIQKLCHSLRVISDKELEEANLSIDEMISSVEGGFDRTVICEELQHKGTVASLDTEEKISETTGRKFSDPRQQQESPILKGNFDCVRECSTSVQGNLSSVRMSKMGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPELASPNLSGTSMFSTLNQTDNPNSISTQPDPGSLSPEGTSKSPSSSCGQSSISSHSCSSMSELQQQHHTTNIAGNKDSTMAGEDSADVALKRIRSEAELKSLNEDKAKLLSRSLSQETLGEHPKNQYERPLLKTSSKVDAHRVKVTYGDEKARFRMPKNWGYEDLVQEIGRRFNVSEMSKFDVKYLDDDSEWVLLTCDADLEECIDVCRSSEKATIKLSLQISSHSLRSSLEFR 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02459 900 MobiDBLite consensus disorder prediction 1 22 - -
Vian4g02459 900 SUPERFAMILY CAD & PB1 domains 805 890 - -
Vian4g02459 900 Pfam RWP-RK domain 587 635 IPR003035 -
Vian4g02459 900 MobiDBLite consensus disorder prediction 676 750 - -
Vian4g02459 900 Gene3D - 182 308 IPR029016 -
Vian4g02459 900 Pfam PB1 domain 807 887 IPR000270 GO:0005515
Vian4g02459 900 Gene3D - 804 887 - -
Vian4g02459 900 PANTHER PROTEIN NLP8 91 896 IPR045012 GO:0003700
Vian4g02459 900 ProSiteProfiles RWP-RK domain profile. 572 655 IPR003035 -
Vian4g02459 900 ProSiteProfiles PB1 domain profile. 806 889 IPR000270 GO:0005515
Vian4g02459 900 SMART PB1_new 806 889 IPR000270 GO:0005515
Vian4g02459 900 MobiDBLite consensus disorder prediction 676 744 - -
Vian4g02459 900 Coils Coil 758 778 - -
Vian4g02459 900 CDD PB1_NLP 807 887 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02459 Vian-Chr4 41198517 41202342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02459 26 891 NLP Transcription Factor Family AT1G20640 47.144 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian4g02459 PB1 4.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02459 - - gmx:100785135 1399.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02459 4 41198517 41202342 Vian4g02459 4 41198517 41202342 ECH