Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02435 ATGTCATCTGTGCCGGAAACCTACGCCGGAGAAGACGGAAAACACTACCCTGCTCCACTCGCCCCTCATGACGACGTCGTCAGGGACTCCTCCCTCTTCTGGGACACTCTCAGACGCTTTCACTTCCTTATGGGATTAAGGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTTTACGTGGAAGTTACCAGAAGAAGTGGCTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGCGTTTTCAAGTTCTCAGCAACCACCACAAGTGCTTCTTTTGTGTTGAGGAAACATTACTTCAGTCTTCTCTATCATTACGAACAGGTTCACTTTTTCAAAGCTCGGGGTTCTGTCTATACTCCTTCAACAGATGCATTTTCCGGGAACAGTCCTTCTTGGAGACCTGAATTAGCTATCGTGGAATATTCTCCTAAGCCCTCAAATAGTAGTCCCGAATCCCGTGCCGAAGAAACATCATGTCTCTCAGGAAATGGAACTATAGAGGGAAAATTTGAGTGTGGTTATTTGGTATCAGTGAAACTGGGTTCAGAGGTTCTTAGAGGGGTGCTTTACCATCCAGAAAAAATGGTTGCTCCACCTTCGATTCCACAACACGAGAATGCCATTGTGCCGTTCAAAAGCAAAGGTCACCGTTCTGGTCGGAGGAGGAGAAACAAGAGAAGATGGGACCCTAACTATCCAAAGCCGAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACTCTCTCAAAGCTCTCTATCCCAACAGAGAAAGGGAGTTTACCAAGATGATTGGCCAGTCATGGAACAGTCTTAGTCCCGAAGAACGACTGGTTTATCAGAACATCGGATTAAGAGACAAAGAAAGGTACAAGAGAGAACTGACGGAGTACAAAGAGAGCATGAAGCTTAGGGAGACCCCAGGACTTCCATAG 957 0.4608 MSSVPETYAGEDGKHYPAPLAPHDDVVRDSSLFWDTLRRFHFLMGLRIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSATTTSASFVLRKHYFSLLYHYEQVHFFKARGSVYTPSTDAFSGNSPSWRPELAIVEYSPKPSNSSPESRAEETSCLSGNGTIEGKFECGYLVSVKLGSEVLRGVLYHPEKMVAPPSIPQHENAIVPFKSKGHRSGRRRRNKRRWDPNYPKPNRSGYNFFFAEKHYSLKALYPNREREFTKMIGQSWNSLSPEERLVYQNIGLRDKERYKRELTEYKESMKLRETPGLP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02435 318 Pfam ARID/BRIGHT DNA binding domain 31 112 IPR001606 GO:0003677
Vian4g02435 318 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 311 - -
Vian4g02435 318 Gene3D High mobility group box domain 223 314 IPR036910 -
Vian4g02435 318 MobiDBLite consensus disorder prediction 216 239 - -
Vian4g02435 318 Gene3D - 22 123 IPR036431 GO:0003677
Vian4g02435 318 CDD ARID_HMGB9-like 29 112 IPR045303 GO:0003677
Vian4g02435 318 SMART bright_3 28 117 IPR001606 GO:0003677
Vian4g02435 318 CDD HMG-box_AtHMGB9-like 239 305 - -
Vian4g02435 318 SUPERFAMILY ARID-like 25 124 IPR036431 GO:0003677
Vian4g02435 318 SMART hmgende2 238 307 IPR009071 -
Vian4g02435 318 MobiDBLite consensus disorder prediction 220 234 - -
Vian4g02435 318 SUPERFAMILY HMG-box 236 309 IPR036910 -
Vian4g02435 318 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 239 306 IPR009071 -
Vian4g02435 318 SMART ARID_2 24 112 - -
Vian4g02435 318 ProSiteProfiles ARID domain profile. 27 116 IPR001606 GO:0003677
Vian4g02435 318 Pfam HMG (high mobility group) box 239 306 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02435 Vian-Chr4 40980534 40982463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02435 14 313 ARID Transcription Factor Family AT1G76110 63.987 3.25e-130 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vian4g02435 ARID 3.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02435 - - gmx:100784746 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02435 4 40980534 40982463 Vian4g02435 4 40980534 40982463 ECH