Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02429 ATGCCTCAAAAGCATAGCACCGTGGTCTACCTCCATGGGACCCTCGATCTGGTAATCGTCGAGGCTCGCTGCCTTCCCAACATGGATTTGCTCTCCGAGCGTGTCCGAAGGTTCTTCTCCGCCCTCAACACTTGCAGCGCCTCCATATCCGGAAAAAGGAAGCTCCACCGCGCCCGCCACCGCCACCGCAAGATCATCACCAGCGATCCTTACGTCACCGTGTGCCTCGCCGGCGCCACCGTCGCGCGCACCCGCGTGATCTCTAATTCGCAGAGCCCTTCCTGGGACGAGCACTTCAAGATCCCGCTCGCGCACCCGGCCGCGCAGGTCGACTTCTTCGTCAAGGACAACGACATGTTCGGCGCCGACCTCATCGGAGTCGTCACCGTCTCAGCCGAGAGAATCCTCTCCGGCGAACCCATCAGCGACTGGTTCCCGATCATCGGCTCGTTCGGGAAGCAGCCGAAGCCTGACTGCGCGCTGCGCCTAGCGATGAAATTCACGAGGTGCGAGAACACTCGCATGTTCCGGTCCCTCAAGGAACCGGATCCGGATCGGTTCGTGGTTCGGGACTCTTATTTCCCGGTCCGTCACGGAGGGGCGGTGACGCTGTATCAGGACGCGCACGTGCCAGAGGCAATGTTGCCGGAGGTTGAGTTAGAGGAGGGTGTGAATTTTGAGCATGGGAAGTGCTGGGAAGATATATGCCACGCTATTTTGGAAGCGCACCATTTGGTTTACGTTGTGGGTTGGTCCATCTACCACAAAGTTAGGCTCGTGAGAGAGCCTACCAAACCCTTACCGAGCGGTGGTAGTTTGAATTTGGGGGAGTTGCTCAAGTACAAGTCCCAAGAAGGTTTGCGAGTTTTACTTTTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTTTCATTAACACGGTTGTTGGAACGCTCTTTACACATCATCAGAAATGTGTGATTGTGGATACTCAAGCACATGGCAATAATAGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCTGAGCACAGACTTTTCCGCGATATGGACACTGTTTATCAGGACGATTATCATAATCCCAGTTTTTGCACGGGAACCAAAGGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATATACTTACTAATTTTGAGCAGCGTTGGAGAAAGGCCACGAGATGGTCTGAGTTGGGTCGAAAGCTCAAAAGAGTGTCTCACTGGAACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAATTCCAACTGATGATCCTGAACTCTGGGTTTCGAAGGAAGGCGATCCTAAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGCTCTTTAAAAGGATTTCCTAAGGATGTATTTGAAGCTGAGTCCCAGAACCTTGTGTGTGCAAAAAATCTGGTTATAGACAAGAGTATTCAAACAGCGTATATACACGCTATCAGATCTGCTCAACATTTTATTTATATCGAGAATCAATATTTTGTTGGATCATCCTTTGCTTGGCCAGCTTACAAAGATGCAGGCGCTGATAACCTAATTCCGATGGAGTTGGCACTGAAGATAGTTAGTAAGATACGATCCAAGGAGAGATTTACAGTGTATATAGTCATCCCAATGTGGCCCGAAGGTAACCCTTCTTCTGCTTCTGTGCAAGAGATACTCTTTTGGCAGGCACAAACTATGCAAATGATGTATAATGTCATAGCTCGGGAATTAAAAGTTATGGAACTTGACCATCATCCACAAGATTATCTCAACTTTTATTGTCTTGGAAACCGAGAGCCGTTGAAAAATGGTTTTTTAAGTCCAAGTAGTTCGTCTCCAGATAATGGCGAAACGATTTCACCCTCACAAAAGTTCCGAAGGTTCATGATTTATGTACATGCCAAGGGAATGATTGTGGATGACGAATATGTAATTCTTGGGTCTGCCAATATCAATCAACGATCTATGGCTGGATCAAGAGACACCGAGATAGCAATGGGTGCGTATCAACCCCATCATACATGGGGTAAGAAAAAGGGGCATCCACATGGTCAGGTATATGGGTATAGGATGTCTTTATGGGCAGAACACATAGGGAGCATACAAGCTTGCTTTAAGAATCCTGAAAGTCTGGAATGCGTGAGAAGTGTGAACAGTATTGCTGAAGAAAACTGGAGGAGGTACACATCTGACGATTATAATCCATTGCAAGGGCACCTGATCAAATATCCTGTGAGTATAAATGCCACTGGGAAGATAAAGTCCATACCTGGATTTGAGTCTTTCCCAGATGTTGGAGGCAAGGTGCTTGGCTCCAGATCCAACCTTCCTGATGCTCTAACCACATAG 2427 0.4759 MPQKHSTVVYLHGTLDLVIVEARCLPNMDLLSERVRRFFSALNTCSASISGKRKLHRARHRHRKIITSDPYVTVCLAGATVARTRVISNSQSPSWDEHFKIPLAHPAAQVDFFVKDNDMFGADLIGVVTVSAERILSGEPISDWFPIIGSFGKQPKPDCALRLAMKFTRCENTRMFRSLKEPDPDRFVVRDSYFPVRHGGAVTLYQDAHVPEAMLPEVELEEGVNFEHGKCWEDICHAILEAHHLVYVVGWSIYHKVRLVREPTKPLPSGGSLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFRDMDTVYQDDYHNPSFCTGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATRWSELGRKLKRVSHWNDDSLIKLERISWILSPSESIPTDDPELWVSKEGDPKNWHVQVFRSIDSGSLKGFPKDVFEAESQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFVGSSFAWPAYKDAGADNLIPMELALKIVSKIRSKERFTVYIVIPMWPEGNPSSASVQEILFWQAQTMQMMYNVIARELKVMELDHHPQDYLNFYCLGNREPLKNGFLSPSSSSPDNGETISPSQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPHHTWGKKKGHPHGQVYGYRMSLWAEHIGSIQACFKNPESLECVRSVNSIAEENWRRYTSDDYNPLQGHLIKYPVSINATGKIKSIPGFESFPDVGGKVLGSRSNLPDALTT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02429 808 Pfam C2 domain 13 147 IPR000008 -
Vian4g02429 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 152 IPR035892 -
Vian4g02429 808 SUPERFAMILY Phospholipase D/nuclease 500 739 - -
Vian4g02429 808 CDD C2_plant_PLD 8 168 - -
Vian4g02429 808 Gene3D Endonuclease Chain A 223 429 - -
Vian4g02429 808 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Vian4g02429 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Vian4g02429 808 Pfam Phospholipase D C terminal 729 798 IPR024632 -
Vian4g02429 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 311 346 IPR001736 GO:0003824
Vian4g02429 808 Gene3D Endonuclease Chain A 480 700 - -
Vian4g02429 808 SMART pld_4 654 681 IPR001736 GO:0003824
Vian4g02429 808 SMART pld_4 311 346 IPR001736 GO:0003824
Vian4g02429 808 SUPERFAMILY Phospholipase D/nuclease 180 416 - -
Vian4g02429 808 Gene3D C2 domain 11 178 IPR035892 -
Vian4g02429 808 SMART C2_3c 14 144 IPR000008 -
Vian4g02429 808 Pfam Phospholipase D Active site motif 312 346 IPR001736 GO:0003824
Vian4g02429 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Vian4g02429 808 PIRSF PLD_plant 1 308 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vian4g02429 808 PIRSF PLD_plant 300 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vian4g02429 808 FunFam Phospholipase D 470 700 - -
Vian4g02429 808 PANTHER PHOSPHOLIPASE D 5 798 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02429 Vian-Chr4 40936188 40942958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02429 8 807 Phospholipase D Gene Family (Wang group) AT2G42010 49.654 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02429 K01115 - gmx:100795859 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02429 4 40936188 40942958 Vian4g02429 4 40936188 40942958 ECH