Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02418 ATGGCCTCTGTGATGTTTGTTTTGGTAAGCTACCTCATATTTTGTTGTTTCTCAGTTCACAGTTTTGCCTTCTCACTTTCTGGATGGACCAATGCACATGCCACCTTTTATGGAGGTAGTGATGCCTCTGGGACAATGGGAGGAGCATGTGGGTATGGGAATCTGTATTCAACAGGGTATGGGACTGATACAGCAGCACTGAGTACTGCATTATTTAACGATGGAGCTTCGTGTGGGGAGTGTTACAAAATCATGTGCGATTATCAAGCAGATCCGAAATGGTGCTTGAAAGGAACATCTGTAACCATAACTGCCACAAACTTCTGCCCTCCCAATTTCGCTCTGCCAAGCAACAACGGTGGCTGGTGCAACCCTCCTCTCAAACACTTTGACATGGCTCAACCCGCATGGGAAAAGATTGGTATCTATAGAGGAGGGATCGTGCCCGTTTTGTTCCAAAGGGTTGCATGCACGAAGAAGGGAGGGGTTAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTGCTGATCAACAACGTGGGAGGAGCTGGATCTATTCAATCTGTGTCCATCAAAGGCTCAAAAACTGGGTGGATGACTATGTCAAGAAATTGGGGTGCTAATTGGCAATCCAATGCCTATTTGAATGGTCAATCTCTGTCTTTCCGAGTCACAACAACCGATGGTGTCACCAAACTTTTTCAAAATGTTGTTCCATCCAATTGGGCTTTTGGCCAGAGTTTCTCTACCAGTGTTCAGTTTTAG 768 0.457 MASVMFVLVSYLIFCCFSVHSFAFSLSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTALFNDGASCGECYKIMCDYQADPKWCLKGTSVTITATNFCPPNFALPSNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVACTKKGGVRFSVNGRDYFELVLINNVGGAGSIQSVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGVTKLFQNVVPSNWAFGQSFSTSVQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02418 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Vian4g02418 255 SMART dpbb_1 64 152 IPR007112 -
Vian4g02418 255 Gene3D - 162 255 IPR036749 -
Vian4g02418 255 FunFam Expansin 162 255 - -
Vian4g02418 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Vian4g02418 255 Gene3D - 16 158 IPR036908 -
Vian4g02418 255 CDD DPBB_EXPA_N 28 157 - -
Vian4g02418 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vian4g02418 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Vian4g02418 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vian4g02418 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vian4g02418 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vian4g02418 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Vian4g02418 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Vian4g02418 255 Pfam Lytic transglycolase 64 151 IPR009009 -
Vian4g02418 255 SUPERFAMILY Barwin-like endoglucanases 28 180 IPR036908 -
Vian4g02418 255 FunFam Expansin 18 158 - -
Vian4g02418 255 PANTHER EXPANSIN-A15 8 251 IPR002963 GO:0009664
Vian4g02418 255 SUPERFAMILY PHL pollen allergen 159 250 IPR036749 -
Vian4g02418 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vian4g02418 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Vian4g02418 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Vian4g02418 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vian4g02418 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vian4g02418 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Vian4g02418 255 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vian4g02418 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Vian4g02418 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02418 Vian-Chr4 40820177 40821602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02418 64 255 Expansin Gene Family AT1G20190 82.812 1.47e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02418 - - gmx:100792023 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02418 4 40820177 40821602 Vian4g02418 4 40820177 40821602 ECH
Vian7g00929 7 17544687 17546072 Vian4g02418 4 40820177 40821602 PCT