Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02407 ATGTTACTGTTGTTGATGACGGTCTTTTGCAAAACCAAAGGAGCATTGCAACTTCCACCAAATTTGAAGGTTCCTGCAGTGTTGGTGTTCGGAGATTCGATAATGGACACCGGCAACAACAACAACAACACGCATACGCTTGCAAAGTGCAATTTCCCTCCCTATGGTAGAGACTTCCAAGGAGCCATTCCGACGGGTCGATTCGGTAACGGAAAAGTTCCTTCCGATCTTATAGCTGAAGAACTAGGAATTAAGGATCTTCTACCGGCATATTTCGATCCAAATCTCCAACCTAATGATCTCCTCACTGGTGTCTGTTTTGCATCTGGTGGTTCAGGCTACGATCCTCTCACATCTAAAATGGCGACAGCTATATCATTGTCTGGTCAAATAGACATGTTCAAAGACTACATAAGAAAGCTTGAAGGACTTGTCGGGGAGGACAGAACCAACTTCATCCTAGCCAATAGCATTGTCCTTGTGGTGGAAGGCAGCAACGACATTTCCAACACTTACTTTCTGAGTCATGCTAGAGAAGTGCAATATGATATTCCTACTTACACTGACCTAATGGTTAGCTCAGCTTCTAGTTTCTTAAAGAGAACAATTTTGGGAGGATTGCTCAGAAAATGTGCAGAAAAGTATAACGAAGCGGCCAAGTTATTCAACAGCAAACTGGCTAAGGAGTTGGCTTCTCTTAACCAGAATTTGCCTAATGCCAGGGTGGTTTACCTTGATGTTTACAACCCTCTACTTGATATCATTGTAAATTACCAAAATTATGGTTTTAAAGTGGGAGACAGAGGATGTTGTGGTACGGGCAAAATAGAGACTGCAGTGTTCTGCAACTCTTTGGACCCCACGTGTCAGAATGCGGGAGACTACGTTTTTTGGGATGGTTTTCATCCTTCTGAAAGTGTTTACAGAAAGCTCGTACCTCCTATTCTCCAAAAATATATGTACCAGTTCATCTGA 975 0.4267 MLLLLMTVFCKTKGALQLPPNLKVPAVLVFGDSIMDTGNNNNNTHTLAKCNFPPYGRDFQGAIPTGRFGNGKVPSDLIAEELGIKDLLPAYFDPNLQPNDLLTGVCFASGGSGYDPLTSKMATAISLSGQIDMFKDYIRKLEGLVGEDRTNFILANSIVLVVEGSNDISNTYFLSHAREVQYDIPTYTDLMVSSASSFLKRTILGGLLRKCAEKYNEAAKLFNSKLAKELASLNQNLPNARVVYLDVYNPLLDIIVNYQNYGFKVGDRGCCGTGKIETAVFCNSLDPTCQNAGDYVFWDGFHPSESVYRKLVPPILQKYMYQFI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02407 324 SUPERFAMILY SGNH hydrolase 21 317 - -
Vian4g02407 324 Pfam GDSL-like Lipase/Acylhydrolase 27 311 IPR001087 GO:0016788
Vian4g02407 324 FunFam GDSL esterase/lipase APG 16 206 - -
Vian4g02407 324 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 27 38 IPR008265 GO:0006629|GO:0016298
Vian4g02407 324 PANTHER GDSL ESTERASE/LIPASE EXL3 8 201 - -
Vian4g02407 324 CDD SGNH_plant_lipase_like 25 319 IPR035669 -
Vian4g02407 324 Gene3D SGNH hydrolase 18 320 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02407 Vian-Chr4 40730367 40736025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02407 21 317 Pollen Coat Proteome AT1G75910 39.506 1.63e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02407 - - gmx:100793604 557.37