Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02384 ATGTCGACTTCCGGCCAGGATCATCATCAATCCCACGACCCTTCTCATCCATCTCAATTTAAATTCCACCTGCTGCACTCCCCTTCTCACATTTCTCCCCTTCCCCATTATCTTTTTCCCAATTTCTTCCCGAGTCAAAGATATGAAAATAGTCACAGAAGTAATCTCGAAGTGGTTCCCCCTCCAGTTCAAACCCAGTCTACCGAAAGAGGAAAGCAAAATGGTAAATCAAAACTTTCTAGAAACACAAAATCTGGGACTCACAGACCTAGTGCCGATTCTCCTAATTTAACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTGACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAGGGATGGCACCCTTGATCTTAACAAAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATCTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAAAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAGAACCAAATAAACGGTCTAAAGGCTGAAGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGAAAGTGAAAGCTCTCAGAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATAGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCTGATGAGGAATCAGTTTTCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACTGCAAGTATGAAGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCATGGAACAGTGAGCAATGCATAAAGAGAGGTGTGGGATTATTAGAAAGCCACGACGATAAACAAAATACTTCTGAAAGTTTCAATTTTCATGAATCACAGGCATCTGGAATTCAAGAAATAACTCCCACTGATTTTGAAATGGAAGATGACTACTGGTTTCAGTCAGATCCTGGAGTAAGGCTAACACAACTGTGGGAAAATGAACCAATTTTGCCTATAGACGAGCTACCAGACTATTAA 1155 0.4087 MSTSGQDHHQSHDPSHPSQFKFHLLHSPSHISPLPHYLFPNFFPSQRYENSHRSNLEVVPPPVQTQSTERGKQNGKSKLSRNTKSGTHRPSADSPNLTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKLMDPSWNSEQCIKRGVGLLESHDDKQNTSESFNFHESQASGIQEITPTDFEMEDDYWFQSDPGVRLTQLWENEPILPIDELPDY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02384 384 Pfam E2F transcription factor CC-MB domain 185 284 IPR032198 GO:0046983
Vian4g02384 384 Gene3D - 176 287 - -
Vian4g02384 384 SUPERFAMILY "Winged helix" DNA-binding domain 104 167 IPR036390 -
Vian4g02384 384 Coils Coil 199 219 - -
Vian4g02384 384 SUPERFAMILY E2F-DP heterodimerization region 181 287 IPR037241 -
Vian4g02384 384 MobiDBLite consensus disorder prediction 1 21 - -
Vian4g02384 384 MobiDBLite consensus disorder prediction 57 99 - -
Vian4g02384 384 FunFam E2F transcription factor 1 98 171 - -
Vian4g02384 384 PANTHER TRANSCRIPTION FACTOR E2F 60 372 IPR015633 GO:0000978|GO:0006357
Vian4g02384 384 Pfam E2F/DP family winged-helix DNA-binding domain 106 169 IPR003316 GO:0005667|GO:0006355
Vian4g02384 384 SMART E2F_TDP_2 104 169 IPR003316 GO:0005667|GO:0006355
Vian4g02384 384 Gene3D - 99 171 IPR036388 -
Vian4g02384 384 CDD E2F_DD 180 287 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02384 Vian-Chr4 40557094 40560413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02384 72 372 E2F-DP Transcription Factor Family AT1G47870 50.492 2.19e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vian4g02384 E2F_CC-MB 1.8e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02384 4 40557094 40560413 Vian4g02384 4 40557094 40560413 ECH