Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02379 ATGGCAATCTCAATGTCAGAAGGGGGACTTGCAAAATGTACCAGAATCCGGCACATAGTCAGGCTCCGCCAAATGCTGCGGCGCTGGCGTAGCAAGGCCCGCATGTCGGCCCACCGACAAGTACCCTCCGATGTTCCGGCGGGACACGTGGCGGTGTGCGTGGGCAGTAACTCCAGGAGATTCGTGGTGCGCGCCACCTACCTGAACCACCCCGTGTTCACGAAGCTACTTGTAGAGGCGGAGGAAGAGTACGGGTTCTCCAACCACGGTCCTCTCACCATTCCCTGCGACGAAACACTCTTCGAACAGCTCCTCCGCTTCATTTCACGCTCCCATTCCCCTCCCTCCAACCGTTTCGACGACTGTCACGTCCCTCTCATAAACAACCTCGACTTCTGCCTCCAATCTCGACCAATACTCCACTGA 426 0.5751 MAISMSEGGLAKCTRIRHIVRLRQMLRRWRSKARMSAHRQVPSDVPAGHVAVCVGSNSRRFVVRATYLNHPVFTKLLVEAEEEYGFSNHGPLTIPCDETLFEQLLRFISRSHSPPSNRFDDCHVPLINNLDFCLQSRPILH 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02379 141 Pfam Auxin responsive protein 21 107 IPR003676 GO:0009733
Vian4g02379 141 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 32 104 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02379 Vian-Chr4 40486137 40486562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02379 10 140 Calmodulin-binding Proteins AT4G34750 48.611 2.67e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02379 K14488 - gmx:100794795 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02379 4 40486137 40486562 Vian4g02379 4 40486137 40486562 ECH