Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02376 ATGCGCCGATTGCAAAAATCAAAAAGAGTTTCATGGGCCTCCGATTTAGATCTTTGTCAGGTTAGGCTATTCTTATCAGAAGAATCCCCTTCGCAGGTTGGATTAAATTCTCAAGATCACCTCCAAGCTAAGGCATCATTGCAGTTCCCTGCAGGTGGACCAGGTTCCGATGACATTCTGCCTCCTGGATTTGAGGGAACTCATACTTCAAGTCAGTTTGAGATTAAGCCATCTCAAATACCAGTTATTAAGTGGATTACTCCTCCAAAGATTGTGCTAAATCTCGAATGGCAAGTAGTGTCTGGGGAAGAAAGCAAAGAGGTAGAGGATCAACGTCAGAGGGAGATGAGAGTACTTGAAGCTATTTATCCTCGCACATCATCCATTCCTCCAAACCCTTCTGTTTCAGTGGATGTTGAAGATTCAAATTACATGGATGTTCAACCTGTACTGATACCAATAACGGCAATTGAAGATGACGATGCAGCAGCAGATACATTATCGGATTCCTTGGAACCAGTTGATGCTTCACAATCTCTTGAATTACCTCCCGGTATGTTGAAGAATTCAAACTCTGCCACAAGTACGCAATTTGCTCGTGGTCTGACATCTGATGTATCTGCTGCATCTATTGCTTTAACTAACATTGTGAGGAGCAACGAACATGGGAAATTGATTGACCATGAATTACTTAATAATATTCTCAGCAATCCAGAAGTGATTGAGAAATTGGTTAGAGATTATGGACCTACTAATAATTCGCAATATGTACATAATGTGGGGTCGTCCTGTGCGGTTTTTTCAAATCCTCCTATTCCTGTTAATCAAAGAGAAACCGCTACACCTTCATCGATTGCTTTTTCAGCCACTTCTTCCTATACACCATCTACCGGAGGTCAGGTGGCACCTGTTTCTACCCAATGGCTTCCTAGGCCTGCAACCAGTTCAGCTATTGTTTCTTCTCCTGTTGAGGTTCCTGCTGCGAAAGATGTTAACTACTATAAGAGTTTAATTCAGCAACATGGAGGAGATAAACAAGAAACACTGCCATATTCCAGTAAACGTCAGATTCATCAGCCAGTAACAAGTTATGAGCCAGCATACAATCAAAGAGCTAAAGTGTCAAAACCAAAGATAATGAAGCCTTGTATCTTTTTCAACAGTTCTAGAGGATGTCGAAATGGAGCCAACTGTGCCTACCAGCATGACGCGTCATTTCAGCCACGAGGTAATACCGTGGCGGGGATACAAAGTTCAAAGAGAATGAAAATGGATCATGAGATTAGCAGTTAA 1293 0.4184 MRRLQKSKRVSWASDLDLCQVRLFLSEESPSQVGLNSQDHLQAKASLQFPAGGPGSDDILPPGFEGTHTSSQFEIKPSQIPVIKWITPPKIVLNLEWQVVSGEESKEVEDQRQREMRVLEAIYPRTSSIPPNPSVSVDVEDSNYMDVQPVLIPITAIEDDDAAADTLSDSLEPVDASQSLELPPGMLKNSNSATSTQFARGLTSDVSAASIALTNIVRSNEHGKLIDHELLNNILSNPEVIEKLVRDYGPTNNSQYVHNVGSSCAVFSNPPIPVNQRETATPSSIAFSATSSYTPSTGGQVAPVSTQWLPRPATSSAIVSSPVEVPAAKDVNYYKSLIQQHGGDKQETLPYSSKRQIHQPVTSYEPAYNQRAKVSKPKIMKPCIFFNSSRGCRNGANCAYQHDASFQPRGNTVAGIQSSKRMKMDHEISS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02376 430 ProSiteProfiles Zinc finger C3H1-type profile. 377 405 IPR000571 GO:0046872
Vian4g02376 430 MobiDBLite consensus disorder prediction 48 70 - -
Vian4g02376 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 270 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02376 Vian-Chr4 40465450 40470381 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian4g02376 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02376 - - gmx:100783321 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02376 4 40465450 40470381 Vian4g02376 4 40465450 40470381 ECH