Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02368 ATGGCAACAACGGTCACATTTTTCACCCTCAGACTCGTCGCTTTCTTCGCCGTCTTAACCATAACCATAACCATAACCACTGCGCAGAACACCACTGCTTCGGAGATTCAAGCCTTAACAGCATTCAAGCGCAACCTCCATGACCCTCTGGGTTCCCTCGACGGTTGGGACTCTTCCACACCCTCTGCACCCTGTGACTGGCGCGGCATTGTCTGTCTCAACAACCGAGTTCACTACCTCCGTCTTCCCCGTCTCCAGCTCGCCGGTGAACTCTCTCCCTCCCTCTCCAATCTCCTCCAACTCCGTAAACTCAGCCTCCACTCCAACAATCTCAACTCCTCCATCCCTCCCTCCCTCTCTCAATGCCTCTTCCTACGCGCAGTTTACCTCCACAACAACCGCCTCTCCGGTCACCTTCCTCGACAGCTTCTCAACCTCACCAACCTACAAATTCTTAACCTTGCGCACAATCTATTCACCGGAGAAATCCCGGACCAGCTTTCCATCTCCCTACGTTTTTTAGACCTATCTGATAATGCCTTCTCCGGCGATATTCCGGCTAATTTCTCATCAAAATCTCAGCTTCAACTCATGAATCTCTCTTACAACAGGTTGAGTGGAGGAATTCCTGGTTCACTGGGAAAGTTGCAAAATCTGCAATTTCTTTGGTTAGACTCTAACCATATTCATGGAACTTTTCCGTCTGCCATTGCCAACTGTTCCTCTCTAGTTCACCTTAGTGCAGAGGACAATGTTCTGACCGGACTTCTTCCTCTTACTTTAGTAACCATACCAAAACTTCAGGTACTTTCACTTTCAGGGAACCAACTTTCCGGTTTGGTTCCCAAGTCCTTTTTCTGCAACAGTCACCTACAAAGCTTGAATCTTGGTTTCAATTCCTTTACGGGGTTTTCTGCACCTCAAAGTGAAGAATGCAATAGTATTTTAAAAATTTTGGATGTTCAAGAAAATCACATTGCTCCCACAAGATTTCCCTCTTGGTTGACCCGGACTACAAAATCGTTGAAGGTGCTTCAGCTCTCGGGAAATTTCTTTACTGGTTCTCTCCCTGTTGATATTGGTAACTTTTTAGCTTTGGAAGAGCTTAGAGTCGCAAATAATTTGTTATCCGGTGGTATTCCGCCTAGCATTGTGAATTGTAGGTTGTTAAAGGTTTTTGATCTTGAGGGGAACCGTTTCTCTGGGTTAATTCCTGAATTTCTCGGGGATATGAGAAACCTAAAGGAGTTTTCTCTTGCCTGTAACCTTTTTACCGGTTCGATTCCTTCTAGTTTTGGAACACTTTCTGCACTAGAGACGCTTAATTTGAGTGACAATAGGTTGACGGGTGTGGTGCCTAAGGAGATCATGAAACTGGGGAACGTGACTGAATTGAATCTCAGTAATAACGAGTTTTCGGGTCAACTTTGGTCAAATATTGGGGACATGACGGGTTTGCAAGTTCTTAATTTGAGTCGATGTGGGTTTTCAGGAAGGGTTCCTGCTTCGTTGGGGAATTTAATGAGACTAACGGTTCTGGACTTGAGCAAGCAGAACCTCTCGGGTGAGTTGCCCCTTGAGGTTTTTGGGTTACCTAGTCTGCAAGTTGTGGCACTTCAAGAGAACCGTTTGAGTGGTAAAGTTCCTGAGGGGTTCAGCAGCATAGTTAGTCTGCGATATCTTAATCTCAGCTCTAATGAATATGTTGGTGACATTCCAATGACTTACGGGTTCCTCAGTTCTTTAACTATTCTCTCTCTGTCTCACAATAGTGTTTCTGGTGAGATACCGCCAGAGATTGGTGGTTGTTCGCAACTTGAAGTATTACAGCTGCAGTCAAATTTTCTACAGGGTAACATTCCTGGTGACATCTCTCGGCTATCTCATTTAAAGGAGCTTAATTTGAGGCACAATAGGTTGAAAGGTGATATCCCAGATGAGATATCAGAGTGTTCTGCCTTGAGTTCACTCTTGTTGGATGGTAATCACTTCACGGGTCGCATTCCCGGTTCCTTGTCAAAACTGTCTAATTTGACCGTGTTGAACCTTTCTTCAAATCTTTTGAATGGGGAAATTCCCGTTGAACTGTCAAGCATTTCTGGTTTGGAGTATTTAAACGTGTCTAGTAATAATCTTGAGGGTGAGATTCCATACGTGCTTGGTGCCAGATTCAATAACCCTTCCGTGTTTGCAATGAACCAAGGTTTGTGCGGGAAGCCCTTGCAGAGGGAATGTGCAAAGGTGAGAAGGAGAAAGAAGAGAAGGCTAATAATGTTGATAGGCGTGGGAGTGGCTGGCTTGTGCCTTTTGGCGTTGTGTTGTTGTGGGTATGTTTACAGCCTCTTGAGGTGGCGGAAGAAGCTTCGAGAAGGGGTGACGGGTGAGAAGAAACGGAGCCCCTCAACAAGTGCAGGTAGTAGAGGGAGCGGTGAAAACGGAGGACCAAAGCTAGTGATGTTTAACAACAAGATCACGTACGCGGAGACATTGGAAGCAACGAGAAACTTCGATGAAGAGAACGTGTTAAGCAGGGGAAGATATGGCCTCGTGTTCAAAGCCTCCTTCCAAGATGGAATGGTTCTCTCCATTCGTCGCTTCGTTGATGGGTTCTTAGACGAGGCTAACTTCCGCAAGGAAGCAGAATCACTGGGCAAAGTGAAGCATCGAAACTTGACAGTTCTTCGTGGTTACTATGCGGGTCCACCAGATGTGAGACTTCTTGTGTATGACTACATGCCCAATGGAAACCTTGGCACACTGCTTCAAGAGGCGTCTCAGCAAGATGGCCATGTGCTGAATTGGCCAATGCGTCACCTCATTGCACTGGGAATTGCTCGAGGGCTAGCTTTCTTGCACTCGGTACCAATAGTTCATGGTGATGTGAAGCCTCAAAATGTTCTTTTTGATGCGGATTTTGAAGCCCATTTGTCTGAATTTGGATTGGAGCGGTTGACAGTGGCAGCAGCGGCAGAAGCATCGTCGTCGTCGACTCCAGTAGGGACATTGGGGTATGTTTCAGCAGAAGCTGTATCGAGTGGGGTGGCGACAAAGGAGAGTGATGTTTATAGCTTTGGGATAGTGTTGTTGGAGATACTAACGGGGAAGAAACCGGTGATGTTCACGGAGGATGAGGACATAGTGAAGTGGGTGAAGAAGCAGTTACAAAGGGGCCAAATATCGGAGTTGTTGGAGCCAGGGTTGCTTGAGCTAGACCCAGAGTCATCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTGGGTCTCCTCTGCACAGCAACGGATCCTCTTGATCGACCGTCAATGTCGGACGTTGCTTTCATGCTACAAGGTTGCCGGGTCGGACCGGAAATCCCGTCATCGGCCGATCCCACAACACTACCTTCTCCTGCTTGA 3393 0.4674 MATTVTFFTLRLVAFFAVLTITITITTAQNTTASEIQALTAFKRNLHDPLGSLDGWDSSTPSAPCDWRGIVCLNNRVHYLRLPRLQLAGELSPSLSNLLQLRKLSLHSNNLNSSIPPSLSQCLFLRAVYLHNNRLSGHLPRQLLNLTNLQILNLAHNLFTGEIPDQLSISLRFLDLSDNAFSGDIPANFSSKSQLQLMNLSYNRLSGGIPGSLGKLQNLQFLWLDSNHIHGTFPSAIANCSSLVHLSAEDNVLTGLLPLTLVTIPKLQVLSLSGNQLSGLVPKSFFCNSHLQSLNLGFNSFTGFSAPQSEECNSILKILDVQENHIAPTRFPSWLTRTTKSLKVLQLSGNFFTGSLPVDIGNFLALEELRVANNLLSGGIPPSIVNCRLLKVFDLEGNRFSGLIPEFLGDMRNLKEFSLACNLFTGSIPSSFGTLSALETLNLSDNRLTGVVPKEIMKLGNVTELNLSNNEFSGQLWSNIGDMTGLQVLNLSRCGFSGRVPASLGNLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENRLSGKVPEGFSSIVSLRYLNLSSNEYVGDIPMTYGFLSSLTILSLSHNSVSGEIPPEIGGCSQLEVLQLQSNFLQGNIPGDISRLSHLKELNLRHNRLKGDIPDEISECSALSSLLLDGNHFTGRIPGSLSKLSNLTVLNLSSNLLNGEIPVELSSISGLEYLNVSSNNLEGEIPYVLGARFNNPSVFAMNQGLCGKPLQRECAKVRRRKKRRLIMLIGVGVAGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPSTSAGSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASFQDGMVLSIRRFVDGFLDEANFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTVAAAAEASSSSTPVGTLGYVSAEAVSSGVATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02368 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 191 - -
Vian4g02368 1130 Gene3D Transferase(Phosphotransferase) domain 1 912 1116 - -
Vian4g02368 1130 SMART LRR_typ_2 531 554 IPR003591 -
Vian4g02368 1130 SMART LRR_typ_2 435 458 IPR003591 -
Vian4g02368 1130 SMART LRR_typ_2 264 287 IPR003591 -
Vian4g02368 1130 SMART LRR_typ_2 675 699 IPR003591 -
Vian4g02368 1130 SMART LRR_typ_2 627 651 IPR003591 -
Vian4g02368 1130 SMART LRR_typ_2 146 170 IPR003591 -
Vian4g02368 1130 SMART LRR_typ_2 216 240 IPR003591 -
Vian4g02368 1130 SMART LRR_typ_2 98 122 IPR003591 -
Vian4g02368 1130 SMART LRR_typ_2 579 603 IPR003591 -
Vian4g02368 1130 SMART LRR_typ_2 459 483 IPR003591 -
Vian4g02368 1130 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 316 1110 - -
Vian4g02368 1130 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 456 749 - -
Vian4g02368 1130 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 912 1116 - -
Vian4g02368 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 801 911 - -
Vian4g02368 1130 FunFam Piriformospora indica-insensitive protein 2 356 452 - -
Vian4g02368 1130 MobiDBLite consensus disorder prediction 793 816 - -
Vian4g02368 1130 Gene3D Ribonuclease Inhibitor 170 458 IPR032675 -
Vian4g02368 1130 Gene3D Ribonuclease Inhibitor 31 169 IPR032675 -
Vian4g02368 1130 Pfam Leucine rich repeat 509 566 IPR001611 GO:0005515
Vian4g02368 1130 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Vian4g02368 1130 Pfam Leucine rich repeat 243 300 IPR001611 GO:0005515
Vian4g02368 1130 Pfam Leucine rich repeat 605 664 IPR001611 GO:0005515
Vian4g02368 1130 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Vian4g02368 1130 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Vian4g02368 1130 SUPERFAMILY L domain-like 32 326 - -
Vian4g02368 1130 Pfam Protein tyrosine and serine/threonine kinase 839 1055 IPR001245 GO:0004672|GO:0006468
Vian4g02368 1130 Gene3D Phosphorylase Kinase; domain 1 811 911 - -
Vian4g02368 1130 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Vian4g02368 1130 SMART serkin_6 836 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02368 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Vian4g02368 1130 Gene3D Ribonuclease Inhibitor 459 754 IPR032675 -
Vian4g02368 1130 Pfam Leucine Rich Repeat 486 507 IPR001611 GO:0005515
Vian4g02368 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 210 304 - -
Vian4g02368 1130 SUPERFAMILY Protein kinase-like (PK-like) 815 1119 IPR011009 -
Vian4g02368 1130 SUPERFAMILY L domain-like 528 730 - -
Vian4g02368 1130 SUPERFAMILY L domain-like 331 585 - -
Vian4g02368 1130 ProSiteProfiles Protein kinase domain profile. 836 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02368 1130 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02368 Vian-Chr4 40377966 40381358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02368 1 1130 Receptor kinase-like Gene Family AT1G75640 63.724 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vian4g02368 PK_Tyr_Ser-Thr 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02368 - - gmx:100801571 1830.45