Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02363 ATGAAGATCCAGTGTGATGTCTGTAACGAACACCAGGCTTCTTTATTCTGCACCGCCGATGAAGCCGCCATCTGCGACGACTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCCTCCAAACACCACCGCTTCTCTCTCACCCACCCCTCTGCTAAGCATTTTCCTCTCTGTGATATTTGCCAGGAGAAAAGAGCTTTTGTGTTTTGTCAGCAAGATAGAGCAATTCTGTGCAAAGAGTGTGACGTGTCCATTCATTCTGTCAACGAACTCACCAAGAACCATAGCAGGTTTCTTCTCACCGGGATCAAGTTTTCTACTTCCGCCATACCTTATTCTTCTTCTTCTTCTTCATCATCATCATCATCAGCAGCAGCCAAGAAAAACCCTGTTCTCGATACTTCACTCCCACCTTCCAATCCTCCTTCAACACCCTCACGGCCTAAGCCTGGAGGAAACTTGCAAACAAATCAAGAACCTGGTTTTACTGGTAGCAGCATATCAGAGTACCTGATAAACACTATCCCAGGCATGAAGTTCGAAGATTTTCTCGATTCCCATTCAACCTTTGATTGCTCTAAGAATGGTGATGAGATGTTGTCGGTGTTTGGTGAGGGAAACATGGTTTCGTTCTCCTCTGGTGGGATCTGGGTTCCTCAAGCGCCACCTTCTGCTGTTGCATACTGGGAACAGATGGGTGAGCAGAATGGGTACAGAGAGGGAAGGAAAGGTAGCGTCAGATCAAGTTTGGGCGATGATAATAATTTCGTAGTTCCTCAGATGAGTCCTCCCAGCAACGTTTCGAAGAAATCCAGGTTTCTTTGGTAG 828 0.4734 MKIQCDVCNEHQASLFCTADEAAICDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSAIPYSSSSSSSSSSSAAAKKNPVLDTSLPPSNPPSTPSRPKPGGNLQTNQEPGFTGSSISEYLINTIPGMKFEDFLDSHSTFDCSKNGDEMLSVFGEGNMVSFSSGGIWVPQAPPSAVAYWEQMGEQNGYREGRKGSVRSSLGDDNNFVVPQMSPPSNVSKKSRFLW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02363 275 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 265 - -
Vian4g02363 275 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Vian4g02363 275 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Vian4g02363 275 CDD Bbox1_BBX-like 5 47 - -
Vian4g02363 275 MobiDBLite consensus disorder prediction 149 165 - -
Vian4g02363 275 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vian4g02363 275 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vian4g02363 275 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vian4g02363 275 MobiDBLite consensus disorder prediction 113 129 - -
Vian4g02363 275 FunFam B-box zinc finger protein 21 1 98 - -
Vian4g02363 275 MobiDBLite consensus disorder prediction 248 269 - -
Vian4g02363 275 MobiDBLite consensus disorder prediction 238 275 - -
Vian4g02363 275 Gene3D Classic Zinc Finger 1 95 - -
Vian4g02363 275 CDD Bbox1_BBX-like 57 100 - -
Vian4g02363 275 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vian4g02363 275 MobiDBLite consensus disorder prediction 113 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02363 Vian-Chr4 40341835 40342919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02363 1 275 C2C2-CO-like Transcription Factor Family AT1G75540 40.774 1.72e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vian4g02363 zf-B_box 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02363 - - gmx:100785978 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02363 4 40341835 40342919 Vian4g02363 4 40341835 40342919 ECH