Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02361 ATGCATCTCCCCCCACCTTCCCTTTGTATTTCCCTTTCCCTCATTAACTCATTATCCTATTCCTGTTCCTATTATCACTCAGAATTCCCAGAAGAAGCAGATAGAAAGGAACAGAAGCATAAGCATAAGGAAGCAGAAGCAGATACAGCAACAACAGCTATGGCTCGTGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCCAAACGACGCAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAACTCCACGAGTACATTAGCCCCTCCACCTCGTACGTAACAAAACACTTCTTTGATCAATACCAGATGACCCTAGGAATTTACTTTCTTCTTCTTCCCCAGAATATGCAGGAGAACTTGAAGAAACTCAAAGAGGTCAATAAGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGCCTGATCGATCTGAATATGGAAGATCTCAAGCTCCTGGAGGATGAAATGGACAAGGCCGCCAAGATTGTTCGTGAGCGTAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCTTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCATTGATAGAGAATGCAGGAGGAGAGTACGATTCTGTGATCGGGTTCTCAAATTTAGGTCCACGCATGTTTGCCTTGAGCCTACAGCCAAGCCATCCTAGTGCTCATAGCGGACCAACCTCTGATCTCACCACTTACCCCTTACTTTTCTAG 804 0.454 MHLPPPSLCISLSLINSLSYSCSYYHSEFPEEADRKEQKHKHKEAEADTATTAMARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSYVTKHFFDQYQMTLGIYFLLLPQNMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEDEMDKAAKIVRERKFNNEKEVHNRLLRDLDARAEDPRFALIENAGGEYDSVIGFSNLGPRMFALSLQPSHPSAHSGPTSDLTTYPLLF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02361 267 CDD MADS_MEF2_like 55 122 IPR033896 GO:0000977|GO:0045944
Vian4g02361 267 Gene3D - 66 130 IPR036879 GO:0003677|GO:0046983
Vian4g02361 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 56 206 - -
Vian4g02361 267 PRINTS MADS domain signature 56 76 IPR002100 GO:0003677|GO:0046983
Vian4g02361 267 PRINTS MADS domain signature 76 91 IPR002100 GO:0003677|GO:0046983
Vian4g02361 267 PRINTS MADS domain signature 91 112 IPR002100 GO:0003677|GO:0046983
Vian4g02361 267 ProSiteProfiles K-box domain profile. 138 223 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian4g02361 267 Coils Coil 138 165 - -
Vian4g02361 267 ProSitePatterns MADS-box domain signature. 56 110 IPR002100 GO:0003677|GO:0046983
Vian4g02361 267 SMART madsneu2 54 113 IPR002100 GO:0003677|GO:0046983
Vian4g02361 267 SUPERFAMILY SRF-like 56 136 IPR036879 GO:0003677|GO:0046983
Vian4g02361 267 ProSiteProfiles MADS-box domain profile. 54 114 IPR002100 GO:0003677|GO:0046983
Vian4g02361 267 Pfam K-box region 139 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian4g02361 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 63 110 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02361 Vian-Chr4 40322711 40326094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02361 54 266 MADS-box Gene Family AT3G54340 50.427 1.19e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian4g02361 K-box 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02361 K09264 - gmx:547720 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02361 4 40322711 40326094 Vian4g02361 4 40322711 40326094 ECH